« Back to Papaver somniferum search


Detailed information on CNT30408298


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30156148Papaver somniferumPistacia vera47.4874.0583.95679forward
CNT30511508Papaver somniferumSolanum lycopersicum75.8782.9583.231085forward
CNT30355742Papaver somniferumLactuca sativa80.0773.2180.091145forward
CNT3056329Papaver somniferumAmborella trichopoda59.7273.9481.62854forward
CNT30330510Papaver somniferumDioscorea rotundata60.6392.3382.12867forward
CNT30724005Papaver somniferumLupinus angustifolius61.8268.4781.79884forward

Expression of CNT30408298

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVMVFPVRVFTNICICIEQFNISN

>peptide 2 (32 aa)
KKKEIFLSKFMISIYTRRNIHTRRSWFQFIQT*

>peptide 3 (30 aa)
MVLPVRVFTKICIPPRSRRTRWRVDSFWML*

>peptide 4 (31 aa)
MVSELSTSNVIVLPVKVFTKICIPPLRRNTK*

Sequence

>CNT30408298
AAAAGAAAAAAGAAATTTTTTTATCGAAATTCATGATTTCAATTTATACTAGAAGAAACATACATACTAGACGTTCATGGTTTCAATTCATCCAAACTTA
AACCACACAACTGCAGTTAACTGTGTTAACTGATGATAGAACAGTCAACATGACAACGATATAAAGAAAAGAACTACTTCAACAATAGAACGAGAATTTG
GAAAACATATCCTTGGCATACTGGAGGACAACCACAAACACCAACAACCTGTCAATAATCACCACCGCGAAGACGGAGGACAAGGTGGAGAGTGGATTCC
TTCTGAATGTTATAATCTGCAAGAGTCCTTCCATCTTCCAATTGCTTTCCTGCGAAAATCAACCTTTGCTGGTCAGGTGGAATCCCCTCCTTATCTTGGA
TCTTTGCTTTCACATTGTCAATGGTATCAGAACTCTCCACCTCCAATGTGATTGTCTTACCAGTCAAGGTCTTTACGAAAATCTGCATTCCTCCCCTGAG
ACGCAACACCAAGTGAAGTGTAGACTCCTTCTGGATATTGTAATCAGCGAGAGTACGGCCATCTTCAAGTTGCTTGCCCGCAAAAATCAACCTCTGCTGA
TCTGGAGGAATTCCCTCCTTGTCTTGAATTTTTGCCTTCACATTATCAATTGTATCAGAGCTTTCAACTTCAAGGGTAATGGTTTTGCCAGTTAAGGTCT
TCACAAAAATCTGCATACCACCACGCAGACGAAGAACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCTGCAAGGGTACGGCCATCTTCAAGTTG
CTTGCCCGCAAAAATCAATCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGAATTTTTGCCTTCACATTATCAATCGTATCAGAGCTTTCAACTTCA
AGGGTAATGGTTTTGCCAGTAAGGGTTTTCACAAAGATCTGCATACCACCACGAAGTCGAAGAACAAGATGGAGAGTTGATTCTTTCTGGATGTTGTAGT
CAGCTAAAGTCCTACCATCTTCAAGCTGTTTACCGGCAAATATCAATCTCTGTTGGTCTGGGGGAATTCCCTCTTTGTCCTGAATCTTTGCCTTTACATT
ATCAATAGTGTCGGAGCTCTCAACCTCCAGAGTGATTGTCTTGCCAGTTAAAGTCTTAACAAATATCTGCATACCACCACGAAGACGTAGCACAAGATGG
AGAGTAGATTCTTTCTGAATGTTGTAATCAGCAAGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAAGATTAATCTCTGTTGATCTGGAGGAATTCCTT
CCTTGTCCTGAATCTTTGCTTTAACATTGTCAATGGTGTCGGAGCTTTCGACCTCAAGAGTAATGGTCTTCCCAGTTAGAGTTTTCACGAATATTTGCAT
CTGCATTGAACAATTCAATATAAGTAATCC