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Detailed information on CNT30408205


BLAST search results

BLAST vs Swiss-Prot:
sp|P27495|CB24_TOBAC, E-value = 5e-161

BLAST vs NONCODE:
NONMTRT001605, E-value = 7e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30404250Papaver somniferumBeta vulgaris43.4743.1879.68443forward
CNT30525387Papaver somniferumPhaseolus vulgaris31.3166.3282.13319forward
CNT30628736Papaver somniferumVigna unguiculata57.879.5980.14589forward
CNT30146197Papaver somniferumMedicago truncatula58.6856.3681.94598forward

Expression of CNT30408205

Peptides detected in this lncRNA

>peptide 1 (36 aa)
YFPGAKLVAYDQALLFTGSARWSARFSRGPLPVTIA*

>peptide 2 (37 aa)
MENIARRPFFSSFTFSSANASGSSARFSRGPFPVTIA*

>peptide 3 (40 aa)
MPLGPLQGLTDRSCHLGKVDQRSHQVDHRQLCNPQQHPLG*

>peptide 4 (35 aa)
MENIARRPFFNSFTFSSANASGSSARPNGSKLPPG*

Sequence

>CNT30408205
CTTACTTCCCGGGAGCGAAGTTGGTAGCATATGACCAGGCATTGTTGTTCACTGGGTCGGCAAGGTGGTCAGCGAGGTTCTCTAGAGGACCTTTGCCAGT
CACAATAGCCTGAACGAAGAACCCAAACATGGAGAACATAGCAAGGCGCCCGTTCTTTAGTTCTTTTACTTTTAGCTCTGCAAATGCCTCTGGGTCCTCT
GCAAGGTTTTCTAGAGGACCTTTTCCAGTCACAATAGCCTGAACAAAGAACCCAAACATGGAGAACATAGCCAGGCGACCATTCTTTAATTCCTTTACCT
TTAGCTCAGCAAATGCCTCTGGGTCCTCTGCAAGGCCTAACGGATCGAAGCTGCCACCTGGGTAAAGTGGATCAACGATCTCACCAAGTGGACCACCGGC
AACTCTGTAACCCTCAACAGCACCCATTAGGATGACCTGTGTGGCCCAAATAGCTAAGATGCTCTGTGCATGAACCAAGCTGGAATTACCCAAATAGTCT
AGTCCTCCTTCACTGAAAATCTGAGATCCAGCTTTAAACCAAACTGCTTCGCCGAATTTGACTCCATTTCTAGAAAGGAGCTCGGGGAAGACACAGCCCA
AAGCGCCTAGCATCGCGCACCTTGAATGGATCACCTCAAGTTCGCGGTTCTTTGCAAAGGTCTCTGGGTCAGCTGATAGGCCAGCAGTATCCCAACCATA
GTCACCAGAAAATTCACCAGTTAGGTAAGAAGGAGACTCACCAGAAAAGGGACCGAGGTATTTGACACGGTCTGGACCGTACCATGGACTTCCTGAAGAA
GCAGCAGGCTTCTTTGCGGATGTCTTCCTCATCGAGATCTTACCATTGCTAGTAGATCTAGCATTGGTTGGGAATTCTGTTTGTGAGTTTAGAGTCACAG
CTTTCCCTGCAAATGATGGAGAAGAGAGAGCCATGGTTGCCGTCAGATATGTTTTTCTTGTTAGCTTGAAAATGAAAGATTACTGTAGATGGTAGTTTGA
TTTGGTGAGTTGATGCAAT