Detailed information on CNT30407349


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675286Beta vulgarisSetaria viridis60.2533.2685.71147forward
CNT30157418Beta vulgarisPistacia vera31.1514.1389.4776reverse complement
CNT30566352Beta vulgarisActinidia chinensis25.8217.2187.363reverse complement
CNT30309694Beta vulgarisCamelina sativa39.3419.8895.8396reverse complement
CNT30606094Beta vulgarisGossypium raimondii99.1863.6885.95242reverse complement
CNT30367812Beta vulgarisSorghum bicolor56.1565.5592.7137forward
CNT30147885Beta vulgarisBrachypodium distachyon50.822690.32124reverse complement

Expression of CNT30407349

Peptides detected in this lncRNA

>peptide 1 (66 aa)
CGLCEQLDALYPFNPLSKMRHKGRKIHGPTPSSPPIGTTRSPQGRLWHPEVTGHHRTLFNSISGTH*

Sequence

>CNT30407349
ATGTGGCCTTTGCGAACAGCTTGATGCACTATATCCCTTCAACCCTTTGAGCAAAATGCGGCACAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCT
CCACCCATAGGAACTACGAGATCACCCCAAGGACGCCTTTGGCATCCAGAGGTCACGGGCCACCATAGAACCCTGTTCAATTCAATAAGTGGAACGCATT
AGCTGTCCGGCCGCTCCCGGGTTGGGCAGTAAAGGTCGGAGAAG