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Detailed information on CNT30406993


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702366Beta vulgarisQuercus lobata29.4611.4589.47114forward
CNT30618949Beta vulgarisSesamum indicum21.963.6388.2485forward
CNT3020470Beta vulgarisCitrullus lanatus29.4621.1587.72114forward
CNT30162096Beta vulgarisPistacia vera19.3825.258475forward
CNT30225247Beta vulgarisHordeum vulgare21.1919.7195.1282forward
CNT30553666Beta vulgarisOryza glaberrima24.299.1595.7494reverse complement
CNT30245388Beta vulgarisAvena sativa19.3821.6890.6775forward
CNT30600960Beta vulgarisFraxinus excelsior42.6418.2787.27165reverse complement
CNT30713193Beta vulgarisMalus domestica golden21.45484.3483reverse complement
CNT30346086Beta vulgarisEragrostis tef29.4615.0489.47114reverse complement
CNT30410483Beta vulgarisPapaver somniferum24.294.5995.7494reverse complement
CNT30331625Beta vulgarisDioscorea rotundata21.4526.185.5483reverse complement
CNT30149608Beta vulgarisBrachypodium distachyon24.298.1493.6294reverse complement
CNT3099709Beta vulgarisOryza rufipogon29.465.2489.47114reverse complement
CNT30581628Beta vulgarisEchinochloa crusgalli23.2626.3295.5690reverse complement
CNT30557400Beta vulgarisPanicum hallii58.9116.6280.7228reverse complement
CNT3039925Beta vulgarisMarchantia polymorpha23.7718.5583.792reverse complement

Expression of CNT30406993

Peptides detected in this lncRNA

>peptide 1 (44 aa)
PRQRRSRYAIRAGRNLPDKEFRYLRTVIVTAAVYWGFNSELCLR*

Sequence

>CNT30406993
CCGAGACAGCGGAGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTT
ACTGGGGCTTCAATTCGGAGCTTTGCTTGCGCTAACCCCTCCTTTTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCATCTTACGATTTTGC
AGAGTGCTGTGTTTTTGTTAAACAGTCGCTTCTCCCTCTTCTCTGCGACCGGACTGTGCTACGAGGGTAAACCTCTTGACACTGCCGGCATACCTTATCC
CGAAGTTACGGTATCAATTTGCCGAGTTCCTTGGCCCAGCTTCACTCAATCGCCTTAGGATTCTCTCCCTGTCCACCTGAGTTGGTT