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Detailed information on CNT30406680


BLAST search results

BLAST vs Swiss-Prot:
sp|P31853|ATPF2_SPIOL, E-value = 1e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3037313Beta vulgarisCucumis melo16.3124.2685.05107forward
CNT3049179Beta vulgarisCucumis sativus10.9821.4988.8972forward

Expression of CNT30406680

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRMRNSAMIIGRVRLKSKREAFSISSAKEG*

>peptide 2 (71 aa)
FIFLFLQISQRFLKFSFNFLPTFKQFRLNFNLSFLLHLIQRSRNLSTRSTHNSISLFFKLFNFRRSIFNIR*

>peptide 3 (70 aa)
MEMAADFRREKFRDLRGVFGRESFGFGVVVVVVVGDWRDFEEDAMANTDLEEDAISMFAMADFVVLFFFF*

>peptide 4 (36 aa)
MPWQTRIWRKMPLACLPWRILLFFFFFFKFVCVFFNF

Sequence

>CNT30406680
TTTCATCTTTCTGTTTCTCCAAATTAGCCAACGCTTCTTGAAGTTCAGCTTCAACTTTCTTCCTACCTTCAAGCAATTTCGCCTCAACTTCAACTTGAGT
TTCCTTCTTCATCTTATTCAACGCAGCAGAAATCTCAGCACGCGCAGCACGCATAACAGCATTAGCTTGTTCTTCAAGTTGTTTAACTTCAGAAGAAGTA
TCTTTAACATCAGATAATTTCTCTTTAATATCAGAATCACGTTTATCCATGAAATCACCAAGTGGAGTGAAGTAAATTTTGTCGAGAGCAAACATGAGGA
TGAGAAATTCCGCCATGATAATAGGAAGAGTGAGGTTGAAATCGAAGAGAGAAGCCTTTTCGATTTCTTCAGCGAAGGAAGGGTGAGGGAGGAGGTAGGA
GAGAGAAAGTGGAGTTATGGAAATGGCGGCGGATTTCAGGAGAGAGAAATTTAGGGATTTGAGAGGGGTTTTTGGAAGAGAGAGTTTTGGTTTTGGAGTG
GTGGTGGTGGTGGTGGTGGGAGATTGGAGAGATTTTGAGGAAGATGCCATGGCAAACACGGATTTGGAGGAAGATGCCATTAGCATGTTTGCCATGGCGG
ATTTTGTTGTTCTTTTTTTTTTTTTTTAAGTTTGTGTGTGTGTTTTTTAACTTTTG