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Detailed information on CNT30406246


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-156

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377699Beta vulgarisArabidopsis thaliana94.7874.5683.02636forward
CNT3020302Beta vulgarisCitrullus lanatus90.6151.0982.57608forward
CNT30525116Beta vulgarisPhaseolus vulgaris98.9644.5683.89664forward
CNT30629220Beta vulgarisVigna unguiculata98.0660.9383.89658forward
CNT30200107Beta vulgarisPisum sativum98.9674.9482.98664forward
CNT30709517Beta vulgarisGlycine max98.9671.4785.54664forward
CNT3045767Beta vulgarisPrunus dulcis98.9645.2384.49664forward
CNT30511543Beta vulgarisSolanum lycopersicum95.5357.983641forward
CNT30171746Beta vulgarisTrifolium pratense88.8277.483.72596forward
CNT30145540Beta vulgarisMedicago truncatula98.9677.7584.04664forward
CNT3061706Beta vulgarisArabidopsis lyrata94.4969.2183.12634forward
CNT30605737Beta vulgarisGossypium raimondii97.9186.2283.41657forward
CNT30214147Beta vulgarisHelianthus annuus98.9682.5983.13664forward
CNT30642231Beta vulgarisCannabis sativa98.0662.0884.5658forward
CNT3027808Beta vulgarisTheobroma cacao98.2156.8183.31659forward
CNT3036798Beta vulgarisCucumis melo94.7829.6682.39636forward
CNT30595409Beta vulgarisEragrostis curvula98.2172.5883.92659forward
CNT30603724Beta vulgarisOryza punctata98.9661.3183.28664forward

Expression of CNT30406246

Peptides detected in this lncRNA

>peptide 1 (79 aa)
AEHKVKGRLLLDVVICQCTTVLELLSSKDKPLLVWWDTLLVLYLCLHIVNCIRALDLQSNGLSCESLDENLHTTTKTKD*

>peptide 2 (79 aa)
MKGRLLLDIVICQSTTILKLLTGKDEPLLIWWDTFLVLYLSLHIVNRIRALNLQSNGLSSESLDKDLHPTTKAEDKMKG*

Sequence

>CNT30406246
GCGGAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGCCAATGTACGACCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTTTGCTGG
TCTGGTGGGATACCCTCCTTGTCTTGTATCTTTGCCTTCACATTGTCAATTGTATCCGAGCTCTCGACCTCCAAAGTAATGGTCTTTCCTGTGAGAGTCT
TGACGAAAATTTGCATACCACCACGAAGACGAAGGACTAAATGAAGGGTAGACTCCTTTTGGATATTGTAATCTGCCAAAGTACGACCATCCTCAAGTTG
CTTACCGGCAAAGATGAGCCTCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGTATCTTAGCCTTCACATTGTCAATCGTATCAGAGCTCTCAACCTCC
AAAGTAATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCATCCCACCACGAAGGCGGAGGACAAGATGAAGGGTTGACTCCTTCTGAATATTGTAAT
CAGCAAGGGTTCGGCCATCTTCGAGTTGCTTACCGGCAAAGATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCTTTGCCTTAACATT
GTCAATTGTATCAGAACTCTCCACCTCGAGAGTGATCGTCTTACCAGTCAAGGTCTTAACAAAGATTTGCA