Detailed information on CNT30406240


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671235Beta vulgarisSetaria viridis44.0229.5387.72114forward
CNT30531354Beta vulgarisEucalyptus grandis98.079.5291.34254forward
CNT30317759Beta vulgarisCorylus avellana10012.790.73259forward
CNT30518402Beta vulgarisJuglans regia66.845.1791.33173forward
CNT30615574Beta vulgarisSesamum indicum97.6816.9994.07253forward
CNT3020678Beta vulgarisCitrullus lanatus45.5630.5791.53118forward
CNT30201817Beta vulgarisPisum sativum98.0741.191.73254forward
CNT30712407Beta vulgarisGlycine max93.4419.5290.91242forward
CNT30569544Beta vulgarisActinidia chinensis1007.0194.21259forward
CNT30237694Beta vulgarisBrassica oleracea86.120.3792.83223forward
CNT30262672Beta vulgarisBrassica rapa49.811.892.25129forward
CNT30608772Beta vulgarisGossypium raimondii91.5175.4894.09237forward
CNT30215974Beta vulgarisHelianthus annuus92.2832.6590.79239forward
CNT30689544Beta vulgarisTriticum urartu45.951.9188.24119forward
CNT30596717Beta vulgarisOryza meridionalis98.0727.3185.04254forward
CNT30360555Beta vulgarisLactuca sativa10023.6593.05259forward
CNT30151942Beta vulgarisPrunus persica98.0710.8290.94254forward
CNT3057989Beta vulgarisAmborella trichopoda95.7547.2488.71248forward
CNT3035415Beta vulgarisCucumis melo95.3736.9892.71247forward
CNT30148081Beta vulgarisBrachypodium distachyon98.0725.0787.4254forward
CNT30116024Beta vulgarisOryza nivara98.0756.787.4254forward
CNT30723989Beta vulgarisLupinus angustifolius48.659.0494.44126forward

Expression of CNT30406240

Peptides detected in this lncRNA

>peptide 1 (53 aa)
AREEIIKTINPIGCRHKFHPQNPYFDCASTISTVLELLDNHNIDNTHRVNGIS*

Sequence

>CNT30406240
GCTAGAGAAGAAATTATAAAAACAATAAACCCTATAGGTTGCCGCCACAAATTCCATCCCCAAAACCCATATTTTGACTGCGCCTCAACTATATCAACTG
TACTTGAACTGTTAGATAATCATAATATTGATAACACACATAGAGTTAATGGTATTTCATAACTAATTGATTGGGCAGCAGCCCGTAGCCCACCTAAAAA
GGAATATTTATTATTTGATCCATATCCTGACATAAGAAGTCCAATGGGAGCAATGCTTG