Detailed information on CNT30406228


BLAST search results

BLAST vs Swiss-Prot:
sp|P04160|PSBB_SPIOL, E-value = 2e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30200101Beta vulgarisPisum sativum98.9117.5387.08271forward
CNT3047375Beta vulgarisPrunus dulcis23.7221.0492.3165forward
CNT3090743Beta vulgarisSolanum tuberosum68.6141.7895.74188forward
CNT30283847Beta vulgarisTriticum aestivum95.9919.2587.45263forward
CNT30483233Beta vulgarisChara braunii16.0620.7590.9144forward

Expression of CNT30406228

Peptides detected in this lncRNA

>peptide 1 (69 aa)
LLQYDERLFLLEQKDQNLPRPMLDLQVVLFQLVHKDRTPIFRARTSLLHEMHQNQNKPPRKEINEFQKS*

>peptide 2 (32 aa)
PCCNMMRGYSSWNKRIKTFHAPCWTYRLYFSS*

Sequence

>CNT30406228
CCCTGCTGCAATATGATGAGAGGCTATTCCTCCTGGAACAAAAGGATCAAAACCTTCCACGCCCCATGCTGGACTTACAGGTTGTACTTTTCCAGTTAGT
CCATAAGGATCGGACACCCATATTCCGGGCCCGTACAAGCCTGTTACATGAAATGCACCAAAACCAAAACAAGCCACCCCGGAAAGAAATAAATGAATTC
CAAAAATCTTAGGCAAATCCAAAGAAGGTTTTCCTATACGTTGATCAGAAAATATTTCTAGATCCGAATACGCC