Detailed information on CNT30405829


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 2e-124

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674978Beta vulgarisSetaria viridis30.7534.1483.07254forward
CNT30640134Beta vulgarisNymphaea colorata39.2347.0982.1324forward
CNT30373037Beta vulgarisArabidopsis thaliana67.5527.3983.15558forward
CNT3019595Beta vulgarisCitrullus lanatus47.5870.8182.7393forward
CNT30728649Beta vulgarisCorchorus capsularis51.4539.0384.71425forward
CNT30224110Beta vulgarisHordeum vulgare15.543.2483.59128forward
CNT30510528Beta vulgarisSolanum lycopersicum68.2843.7983.16564forward
CNT30143750Beta vulgarisMedicago truncatula30.8733.2985.49255forward
CNT30665536Beta vulgarisTriticum dicoccoides50.7363.5882.1419forward
CNT30612239Beta vulgarisArabis alpina56.917.985.53470forward
CNT30445994Beta vulgarisSaccharum spontaneum66.7138.6981.13551forward
CNT3015244Beta vulgarisZea mays27.682.0183.33228forward
CNT30479087Beta vulgarisArabidopsis halleri21.7961.8684.44180forward
CNT30361875Beta vulgarisSorghum bicolor58.2343.6181.29481forward
CNT30370118Beta vulgarisOryza glumipatula18.7725.0887.1155forward
CNT3024028Beta vulgarisPopulus trichocarpa30.9934.6485.55256forward
CNT3050899Beta vulgarisCucumis sativus14.7748.4186.07122forward

Expression of CNT30405829

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MGVRFLLVRKSSILCDILIQTNESNSVSTGNILNCFLLLSHPNDSSLDILNIKILLLTGNIVRSHDPDLHTS*

>peptide 2 (70 aa)
MCSPDSSILQTTIGSDFAKRFRPSTSLGRSEATLHCTATRTTGDTENFIARIGWASDSFSFVRVAFFVIY*

>peptide 3 (33 aa)
VICSFNPFLLRITDTRVEACDPASRGSEGIISQ*

>peptide 4 (33 aa)
MILTFIPVETFPANTRPKAKNLPLSDAGIILDT*

Sequence

>CNT30405829
GGTCATTTGCTCCTTCAATCCCTTCCTCTTACGGATAACTGACACAAGGGTTGAAGCTTGTGATCCTGCCTCCAGAGGGTCAGAAGGCATCATTTCCCAA
TGATCAAACACACACTGGGGGAAAGCCTGACCAGAAGTTGAAGCTCTCAAGGTACTTGAAAATCCGAATGACTCAACAACAGGGAGGTATGCCTTGATGT
TGTAGAGGGGAGTACCAGCAATAATGTGCTCTCCAGACTCCTCAATACTACAGACAACCATAGGATCTGATTTTGCCAAACGCTTTAGACCTTCAACAAG
CTTGGGAAGATCCGAAGCAACCTTACACTGCACAGCAACACGAACAACAGGAGACACAGAGAACTTCATAGCACGAATTGGATGGGCGTCCGATTCCTTC
TCGTTCGTAAGAGTAGCATTCTTTGTGATATACTGATCCAGACCAACGAGAGCAACAGTGTTTCCACAGGGAACATCCTCAACTGTTTCCTGCTTCTTTC
CCATCCAAATGACAGTTCTCTGGACATTCTTAACATAAAGATCCTTCTTCTCACCGGGAACATAGTTAGGTCCCATGATCCTGACCTTCATACCAGTTGA
AACCTTTCCAGCAAATACACGGCCAAAAGCAAAGAACCTACCCTTATCAGATGCAGGAATCATTTTAGACACGTAAAGCATCAAAGGTCCCTCAGGGTCA
CAGTTCCTGATGGCAGTGGCATAGACATCGTCCATAGGACCCTCGTACAAGTTCTCAACACGATATCTCTGAGCTGTTGCAGGGGATGGCAAGTGATGGA
TCATCATTTCAAGCAAAGCGCTGCTA