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Detailed information on CNT30405823


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Beta vulgarisSetaria viridis52.4436.8282.2236forward
CNT30547574Beta vulgarisIpomoea triloba46.4458.8783.73209forward
CNT30512729Beta vulgarisJuglans regia47.5620.885.05214forward
CNT30379936Beta vulgarisManihot esculenta25.1133.8387.61113forward
CNT30488117Beta vulgarisOlea europaea49.1145.2984.62221forward
CNT30711584Beta vulgarisGlycine max27.7817.7689.6125forward
CNT30191304Beta vulgarisSecale cereale52.6718.2284.39237forward
CNT30300473Beta vulgarisTriticum aestivum33.7815.786.84152forward
CNT30224354Beta vulgarisHordeum vulgare45.5639.584.39205forward
CNT30391299Beta vulgarisTriticum turgidum52.4442.9184.32236forward
CNT30561658Beta vulgarisActinidia chinensis49.1118.8986.43221forward
CNT30552635Beta vulgarisOryza glaberrima52.6722.8385.65237forward
CNT30440874Beta vulgarisAegilops tauschii52.6748.5783.12237forward
CNT30313757Beta vulgarisCamelina sativa20.6710.687.193forward
CNT30135610Beta vulgarisLolium perenne52.4427.981.78236forward
CNT30605685Beta vulgarisGossypium raimondii34.4420.2986.45155forward
CNT30683923Beta vulgarisTriticum urartu52.4425.7984.32236forward
CNT30369654Beta vulgarisOryza glumipatula52.6726.9385.65237forward
CNT30107537Beta vulgarisOryza longistaminata3416.6590.2153forward
CNT30100253Beta vulgarisOryza rufipogon52.6721.5185.65237forward
CNT30575129Beta vulgarisOryza barthii3418.889.54153forward
CNT30497701Beta vulgarisDigitaria exilis27.7838.4688125forward
CNT30116094Beta vulgarisOryza nivara52.6726.9385.65237forward
CNT30604019Beta vulgarisOryza punctata23.7831.6687.85107forward

Expression of CNT30405823

Peptides detected in this lncRNA

>peptide 1 (33 aa)
VICSFNPFLLRITDTRVEACDPASRGSEGIISQ*

Sequence

>CNT30405823
GGTCATTTGCTCCTTCAATCCCTTCCTCTTACGGATAACTGACACAAGGGTTGAAGCTTGTGATCCTGCCTCCAGAGGGTCAGAAGGCATCATTTCCCAA
TGATCAAACACACACTGGGGGAAAGCCTGACCAGAAGTTGAAGCTCTCAAGGTACTTGAAAATCCGAATGACTCAACAACAGGGAGGTATGCCTTGATGT
TGTAGAGGGGAGTACCAGCAACAACAGAGTCCTTGATTTCATTCAGATACTGGACTCCCTTACACATATCAACCACCATATTGGGACCAGTAGTTTCAGG
ACCAAAACACCAGATTTTCTTCGCAAGATCCTTGTCCCAGCCGTATTCCTCAGCCAAGATCTTGGAACGGTTCTTTGGGTCATCTCTTGGGCCAATTCGC
CCTTCATCAATGGCCTCAGCAAGCCCCTCTTCCATTGGGCGGGCTTCCAT