CANTATAdb - search

Detailed information on CNT30405820

BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 1e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30513000	Beta vulgaris	Juglans regia	43.86	46.4	82.76	232	forward
CNT30143941	Beta vulgaris	Medicago truncatula	43.48	51.34	83.48	230	forward
CNT30309793	Beta vulgaris	Camelina sativa	29.3	19.92	83.23	155	forward

Expression of CNT30405820

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MKLIRENLHQKNYQNLQRRGILTACLQIQKVGSFAPSIPSSYG*

>peptide 2 (55 aa)
TKISTIALPDLGNRDYHGRCLGNRDYYNKILNPKIGRKIPDTTKNSVVHNVTSTK*

Sequence

>CNT30405820
TACCAAAATAAGCACAATTGCATTACCAGATCTTGGCAATAGAGACTACCACGGCAGATGCTTAGGCAATAGAGACTACTACAACAAAATTTTAAATCCA
AAAATTGGAAGAAAAATCCCAGACACAACAAAAAACAGTGTTGTCCACAATGTAACCAGTACAAAGTAAGCAAGCAGCAATGAAATTGATAAGAGAAAAT
CTTCACCAAAAAAACTACCAAAATCTTCAACGCAGAGGAATCCTCACAGCTTGTCTTCAAATTCAGAAAGTGGGGTCATTTGCTCCTTCAATCCCTTCCT
CTTACGGATAACTGACACAAGGGTTGAAGCTTGTGATCCTGCCTCCAGAGGGTCAGAAGGCATCATTTCCCAATGATCAAACACACACTGGGGGAAAGCC
TGACCAGAAGTTGAAGCTCTCAAGGTACTTGAAAATCCGAATGACTCAACAACAGGGAGGTATGCCTTGATGTTGTAGACGGGCTCCAACAATCTGGGCT
TGGCAGTCAGCTGGGAAGCATAGAAGACT