Detailed information on CNT30405516


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30313019Beta vulgarisCamelina sativa8.2721.2482.31130forward

Expression of CNT30405516

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MASSSSKFFSPQVGRQWNFTYVTLPALLIRVKVYHYCWLSTGNCKHLPGDTAEDQTQIKFGQIFKTLPIIFLFGGTILISILAKSM*

>peptide 2 (76 aa)
MHISMRALRSINRKLQVVDTQTISMCISIRKSTRLKHLIIREINPRNNMGWIKSQLLIFSKKVVNILVQHKTSYRL*

>peptide 3 (47 aa)
MQSTRKGLESRGCGFHLQLEWLLPRANSFHRKLGANGISRMLLCRLC*

>peptide 4 (38 aa)
MCSHQFIIIYFMTNKFRSFKMISYTKQFRINNFDEKML*

Sequence

>CNT30405516
ATACATACAAAAGTTTCCTAAGAGTATCTACAATGGTAAGCTACAATCACTTGTAGTGTTGTGTGCCACATAAGATTTCCAAACTACAACATTTTCAAGC
TACAACTTCTCCCAATAAAAAGCTACAACCACTTGTAATTTTTGTAGGTCCCACTTGTTGTTTACTTATGAAAATTAGAAAGTGATCGAGATGGAAAGAT
ATAAGTAGGGCCTATAAAAAATTAAACAAAGCTACTTGCTTTGTGGAGCTACTTGATTTTGCCAAACTACAACCACTTTTCTACTTCAATAACAAAGCAA
GTAGCTTTAACTTTTAACAAATTGCAAGCAAGGACCTAAAATCACCTACTTATATCTTATACGTGTCACATAAGTATTAACTATATTGTCCTTTTTATTC
GTATATTCTATAATTTCATTAATATGCATGTGACTATGACATATTATTCATATGTGCTCTCATCAATTTATCATTATTTATTTCATGACAAATAAGTTTA
GATCGTTTAAGATGATAAGTTATACTAAGCAATTTAGAATTAATAACTTTGATGAAAAAATGCTCTAAAATCATTATGGTTGGCAAGGCCTAGTAACAAA
TTAAACGAGATTAGGTAAACGCCTAAAAGTGTCCAATACTTTCTGACAAAATGAAACAACATTCGGATAAATTCAAACAAGTTAGTACATCAAGTGTTTT
TTTTTTTGGTTAATAAGTAAAATAAGTAAATTCAGGTAAGGACGATACATACCTCTTCATCCCTGTGCACCATGTTCATAGCACCATCACGATGCATATT
AGTATGCGGGCACTTAGGAGCATTAACAGGAAGCTGCAAGTAGTTGATACCCAAACGATATCTATGTGTATCAGCATACGCAAAAGTACGCGCTTGAAGC
ATCTTATCATTAGAGAAATAAATCCCAGGAACAACATGGGCTGGATCAAAAGCCAGTTGCTCATTTTCAGTAAAAAAGTTGTCAACATTCTTGTTCAACA
CAAGACGTCCTACAGGTTGTAAGGGCAAGATATCTTCAGGCCATGTTTTAGTCATATCAAGTGGATCGAAATCGAACTTATCCTCATCATTCGGATCCAT
AGTCTGAATGTAAAGCTTCCATTCTGGGAAGTTACCCGATGCAATCGACTCGTAAAGGTCTTGAGTCGCGTGGCTGTGGTTTTCACCTCCAACTCGAATG
GCTTCTTCCTCGAGCAAATTCTTTTCACCGCAAGTTGGGCGCCAATGGAATTTCACGTATGTTACTTTGCCGGCTTTGTTGATAAGGGTGAAGGTGTACC
ATTATTGTTGGTTAAGTACGGGGAATTGTAAGCACTTGCCGGGCGATACTGCAGAAGATCAAACCCAGATCAAATTTGGCCAAATTTTCAAAACTTTACC
AATAATATTTTTATTTGGGGGTACAATATTAATAAGTATTTTAGCAAAATCTATGTAGAAATAAACAGTTGAGTTTAACAAATAGCAAACCTTAGTCGGA
TCCATGAAAAGAGGAGGAGAGATAAGAGATGTTGGAATAGTAGTATGATATTGAAGCAAGAAAAGAGACTA