Detailed information on CNT30405515


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317874Beta vulgarisCorylus avellana6.5536.4884.2789forward
CNT30398713Beta vulgarisTriticum turgidum10.9754.7881.21149forward
CNT30511681Beta vulgarisSolanum lycopersicum6.6327.1188.8990forward
CNT30668910Beta vulgarisTriticum dicoccoides10.9753.0281.21149forward

Expression of CNT30405515

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVGCKGKISSGHVLVISSGSKSNLSSSFGSIV*

>peptide 2 (35 aa)
MSWVTSKNPLALAPLACTTRSGIRSWVQVAIFSIK*

>peptide 3 (77 aa)
MASSSSKFFSPQVGRQWNFTYVTLPALLIRVKVLRDSGRYEQKSMYLQLSWMWDFGLGLNARTRSKNCIASRLKTEQ*

>peptide 4 (47 aa)
MQSTRKGLESRGCGFHLQLEWLLPRANSFHRKLGANGISRMLLCRLC*

>peptide 5 (66 aa)
MCNVMGNFKKPLSTCSPSMYNTFRYTLMGPSCYLFYQMIIFQQNGTCLLFSYQHHVSSLTCTTIDP*

>peptide 6 (45 aa)
TSIILQLCDTSSSSLTFTSAYYMVRKLLRIIILVVIHSQSSHGWL*

>peptide 7 (47 aa)
MEFHVCYFAGFVDKGEGVERLWEVRTEIHVPPTFLDVGFWVGFECSD*

Sequence

>CNT30405515
TACGTCCATTATATTGCAACTTTGTGACACCAGCAGTAGTAGCTTGACCTTTACTTCCGCTTATTATATGGTTCGGAAGCTCTTGCGGATCATAATATTA
GTAGTAATTCACAGTCAGTCTTCACATGGTTGGTTGTAAGGGCAAGATATCTTCAGGCCATGTTTTAGTCATATCAAGTGGATCGAAATCGAACTTATCC
TCATCATTCGGATCCATAGTCTGAATGTAAAGCTTCCATTCTGGGAAGTTACCCGATGCAATCGACTCGTAAAGGTCTTGAGTCGCGTGGCTGTGGTTTT
CACCTCCAACTCGAATGGCTTCTTCCTCGAGCAAATTCTTTTCACCGCAAGTTGGGCGCCAATGGAATTTCACGTATGTTACTTTGCCGGCTTTGTTGAT
AAGGGTGAAGGTGTTGAGAGACTCTGGGAGGTACGAACAGAAATCCATGTACCTCCAACTTTCTTGGATGTGGGATTTTGGGTTGGGTTTGAATGCTCGG
ACTAGATCAAAAAATTGCATTGCATCACGGTTGAAAACCGAACAATAACTGGCGTCTGAACACCGGGGGAACGTAGGAAATCAGCACACGTAAGATGTGC
AATGTCATGGGTAACTTCAAAAAACCCCTTAGCACTTGCTCCCCTAGCATGTACAACACGTTCAGGTATACGCTCATGGGTCCAAGTTGCTATCTTTTCT
ATCAAATGATAATCTTCCAACAGAATGGGACCTGTTTATTGTTTTCGTATCAACACCATGTTAGTTCTTTAACATGCACAACAATTGACCCATGATGGTG
TCACAAGTTCCTAAACGATAATACCATTTTCTTTAGAAATATAGCACTTATTGTTAACATTAAATTAGTTGCATACATCAAAATCGTATTTTTTCGAATC
TAATAGAACTTAAAATATTACTAAATCAGACAAATCATTTGTGTCCTTTCCATATTATTCACAGTCCATAAACCTTATATGTTATATGTTAGGGTAACAC
TAAAATAACTCAAGTTTACACTTGAAGTTCCATTTTTCAAAAATGTCTCCATTTTCAAAATCCTAAAACTCCTAGCCATGTCCATGTCCATCCTACATAG
CCAACCATAAACCGGCGGGTACCAAAACTAAGATAACAAAGAAAAAAACATCTGTCGAGTCGGATTGACGAATTAAAAAAAAACAATAGGTATACCTCTG
GGGCCAACAGTTAACGAAGAGTTATCGTTCCAAACAGGTGTACCATTATTGTTGGTTAAGTACGGGGAATTGTAAGCACTTGCCGGGCGATACTGCAGAA
GATCAAACCCAGATCAAATTTGGCCAAATTTTCAAAACTTTACCAATAATATTTTTAT