« Back to Beta vulgaris search


Detailed information on CNT30405510


BLAST search results

BLAST vs Swiss-Prot:
sp|P25819|CATA2_ARATH, E-value = 5e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640190Beta vulgarisNymphaea colorata28.315.4580.45133forward
CNT30532478Beta vulgarisEucalyptus grandis34.2638.782.61161forward
CNT30516671Beta vulgarisJuglans regia34.6834.8384.05163forward
CNT30377107Beta vulgarisArabidopsis thaliana39.7939.5381.28187forward
CNT30501026Beta vulgarisCoffea canephora4012.3185.64188forward
CNT30616919Beta vulgarisSesamum indicum18.7227.2482.9588forward
CNT30282683Beta vulgarisChenopodium quinoa42.7721.8290.55201forward
CNT3021611Beta vulgarisCitrullus lanatus19.3622.9286.8191forward
CNT3070085Beta vulgarisQuercus suber3021.6381.56141forward
CNT30381388Beta vulgarisManihot esculenta26.8121.6187.3126forward
CNT30526368Beta vulgarisPhaseolus vulgaris34.2610.1183.85161forward
CNT30708944Beta vulgarisGlycine max35.3229.1783.73166forward
CNT3046375Beta vulgarisPrunus dulcis42.3428.5183.92199forward
CNT30168584Beta vulgarisPistacia vera17.0229.5288.7580forward
CNT30563752Beta vulgarisActinidia chinensis53.8351.9582.21253forward
CNT3085325Beta vulgarisVigna radiata32.1321.3682.12151forward
CNT30238041Beta vulgarisBrassica oleracea21.9113.5582.52103forward
CNT30313764Beta vulgarisCamelina sativa22.9815.7482.41108forward
CNT30263082Beta vulgarisBrassica rapa41.0657.6181.87193forward
CNT30654455Beta vulgarisRosa chinensis58.0959.7479.12273forward
CNT30714909Beta vulgarisMalus domestica golden53.8348.0181.82253forward
CNT30624536Beta vulgarisDaucus carota39.7913.3182.35187forward
CNT30478285Beta vulgarisArabidopsis halleri29.7940.4681.43140forward
CNT30154268Beta vulgarisPrunus persica42.3441.8183.92199forward
CNT30574555Beta vulgarisVitis vinifera39.7922.6183.96187forward
CNT30704838Beta vulgarisPrunus avium34.8931.4883.54164forward
CNT3022569Beta vulgarisPopulus trichocarpa44.6824.2282.38210forward
CNT3038372Beta vulgarisCucumis melo44.2618.9181.73208forward

Expression of CNT30405510

Peptides detected in this lncRNA

>peptide 1 (95 aa)
LISVHKVHETIIVIVVMRALGGINWKLQVVGTKTVSLGIRIGEDSSLKKLVIGVGDSRNNDSRAKCHVFVTSSGSKSNLSSSAWSMIWMKSFHSG*

>peptide 2 (36 aa)
MPCLCNIKRVKVKLVFISLVYDLDEEFPFRIVASSN*

>peptide 3 (46 aa)
MAVVSSSNFYGLILQQAFHSTCWLPVELHVVYFASLVNQSICVNTRT

Sequence

>CNT30405510
CCTCATCTCTGTGCATAAAGTTCATGAAACCATCATAGTGATTGTTGTGATGAGAGCACTTGGGGGCATTAACTGGAAGTTGCAGGTAGTTGGGACCAAG
ACGGTGTCTTTGGGTATCAGAATAGGAGAAGATTCGAGTCTGAAGAAGCTTGTCATCGGAGTAGGAGACTCCAGGAACAACGATAGCCGGGCAAAATGCC
ATGTCTTTGTAACATCAAGCGGGTCAAAGTCAAACTTGTCTTCATCAGCTTGGTCTATGATCTGGATGAAGAGTTTCCATTCAGGATAGTTGCCAGCAGC
AATTGAGTCATACAGATCCTGAGTAGCATGGCTGTGGTTAGCTCCTCCAACTTTTATGGCCTCATCCTCCAACAGGCTTTTCACTCCACATGTTGGCTTC
CAGTGGAACTTCACGTAGTGTACTTTGCCAGCCTTGTTAATCAGAGTATATGTGTTAACACCAGAACCTT