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Detailed information on CNT30405422


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500332Beta vulgarisCoffea canephora73.7790.8684.28706forward
CNT30616027Beta vulgarisSesamum indicum72.7342.2183.19696forward
CNT30274489Beta vulgarisChenopodium quinoa73.8857.7687.27707forward
CNT30171101Beta vulgarisTrifolium pratense74.1942.6984.79710forward
CNT30312763Beta vulgarisCamelina sativa70.4345.0582.94674forward

Expression of CNT30405422

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MKGGFLLDIVISQSTAIFELLTSKDQPLLVWRNTFLVLNLSLNIVDRIRAFNFQSNRLPVRVLTKICIPPLKRRTRWRVDSFWML*

>peptide 2 (55 aa)
MIDEFTDYRGINTQQSHCSKANNQRRTTTSLETTTKTEDKVLTKICIPPLKRSTK*

Sequence

>CNT30405422
TAGACACAAACAGAGAATATTATTCACAACTGAACCTTAATAGTTCATAGTAACCCAACAGACATACGACGATATAAAACCAACATTTGATAACCAACTG
AAATTAAAATTGTTCAACATAAACTAGATGATAGATGAATTCACAGATTATAGGGGGATAAACACCCAACAAAGCCATTGTTCCAAGGCCAACAACCAAC
GACGAACCACCACAAGCTTAGAAACCACCACGAAGACGGAGGACAAGGTCTTAACAAAGATCTGCATTCCTCCCCTCAAACGAAGCACCAAGTGAAGGGT
AGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTCCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTA
TCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCCGAGCTCTCAACCTCCAAAGTGATAGTCTTGCCAGTCAATGTCTTGACAAAAATCTGCATACCTC
CCCTCAAACGGAGAACCAAATGAAGGGTGGATTCCTTCTGGATATTGTAATCAGCCAAAGTACGGCCATCTTCGAGCTGCTTACCAGCAAAGATCAACCT
CTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCGATCGTATCCGAGCTTTCAACTTCCAAAGTAATCGTCTTCCCGTAA
GAGTCTTGACGAAGATCTGCATACCTCCTCTTAAACGGAGGACAAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTTCGGCCGTCTTC
AAGTTGTTTTCCGGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTTGCCTTTACGTTGTCGATGGTGTCGGAACTCTCA
ACCTCGAGAGTTATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCATCTACAAA