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Detailed information on CNT30404925


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6EN94|YCF76_ORYNI, E-value = 6e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30162794Beta vulgarisPistacia vera26.6221.1288.89189reverse complement
CNT30221081Beta vulgarisHordeum vulgare38.3113.4390.44272reverse complement
CNT30312611Beta vulgarisCamelina sativa21.4123.188.16152forward
CNT30149641Beta vulgarisBrachypodium distachyon38.3113.4991.18272reverse complement

Expression of CNT30404925

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGKFGFNCQLLLSEIGLTTDLSHSTCFHKSV*

Sequence

>CNT30404925
CCTATTGCTACAAAGAAGGGGTCTATTGAGACAACTACTTAGACTGATACTACGATTACAACAACTGTAACTATCGGGACTGAAGCGCAAAGGTTTTGAC
TCTTTAACATATTAGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCTACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCAATCACG
GCGGGGGAGCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCACCACGTCAAGGTGACACTCTACCGCTG
AGTTATATCCCTTCCCTGCCCCCATCGAGAAATAGAACTGACTAATCCTAAGGCAAAGGGTCGAGAAACTCAACGCCACTATTCTACTATTCTTGTCTTG
AACAACTTGGAGCCGGGACTTCTTTTCGCACTATTACGGATACGAAAATAATGGGGAAATTTGGATTCAATTGTCAACTGCTCCTATCGGAAATAGGATT
GACTACGGATTTGAGCCATAGCACATGCTTTCATAAAAGCGTATGATTTTCCCGATCTAAATCAAGCAGGTTTTACATGAAGAAGATTTGGCTCGGCATG
TTCTATTTGATATAGGTAGGAGAAGAACCCGACTCGGTATTAAAAAAAAAATAGAGGAAGCAGAACCAAGTCAAGATGATACGGATCAACCCCATCTCTT
TTTGAAAAAG