Detailed information on CNT30404919


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281447Beta vulgarisChenopodium quinoa21.4128.0980.6134forward
CNT30504332Beta vulgarisNicotiana attenuata13.7425.0787.2186forward
CNT30163276Beta vulgarisPistacia vera13.126.6291.4682forward
CNT30261241Beta vulgarisBrassica rapa12.9422.2585.1981forward
CNT30612661Beta vulgarisArabis alpina10.723.1888.0667forward
CNT30227661Beta vulgarisAnanas comosus14.2239.0486.5289forward
CNT30355344Beta vulgarisLactuca sativa9.7420.488.5261forward
CNT30572629Beta vulgarisVitis vinifera9.1121.4389.4757forward
CNT30120694Beta vulgarisCitrus clementina11.3429.191.5571forward

Expression of CNT30404919

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MWSLKGLYGISTYVFIPGFLLIENYGSSKTPSRVDASSSDWDGSQVNHEYRETNGKQG*

>peptide 2 (33 aa)
MAIFSAPPYQLMELVEGHGSLYLKIQVVAALKLL

>peptide 3 (37 aa)
MPPKAQAIPRIPTPVQFSPPFSRSALLKWPITVSTVT*

>peptide 4 (38 aa)
MVYQLTCSFQDFSSLKITAAPKLLAGLMPVPVIGMVAK*

>peptide 5 (54 aa)
MNTAKPMVNKDKDHATKGPSDTENSNASTIFAAVLKVSTSEVANHSEYSNIKEE*

Sequence

>CNT30404919
CTGAAGGATCCTAGAGCTTTGATTGCACCAGCTCTAAGAATGTATTGGTGGTAAAATGCTGCAATTGCTGCACCAACAAATGGTCCTACCCAGAAAATCC
ACTGTGAAAAAGATTACTCAGCTATAAGAATATAGGAAAATGATAAAACATCGGGATTAACTATTAAGTACATGATTTGATATGTGGAGTCTTAAGGGTT
TATATGGTATATCAACTTACGTGTTCATTCCAGGATTTCTCCTCATTGAAAATTACGGCAGCTCCAAAACTCCTAGCAGGGTTGATGCCAGTTCCAGTGA
TTGGGATGGTAGCCAAGTGAACCATGAATACCGCGAAACCAATGGTAAACAAGGATAAAGATCATGCCACCAAAGGCCCAAGCGATACCGAGAATTCCAA
CGCCAGTACAATTTTCGCCGCCGTTCTCAAGGTCAGCACTTCTGAAGTGGCCAATCACAGTGAGTACAGTAACATAAAGGAAGAGTAGGGTAGCAACAAA
CTCGGCTATGATAGCTCTGTAGAATGGCCATTTTTTCAGCTCCTCCATATCAATTAATGGAGCTGGTGGAGGGTCATGGTAGTCTATATCTAAAAATTCA
GGTTGTTGCTGCACTGAAACTGCTTC