Detailed information on CNT30404910


BLAST search results

BLAST vs Swiss-Prot:
sp|P29766|RL8_SOLLC, E-value = 1e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30146667Beta vulgarisMedicago truncatula15.424.4786.9669forward

Expression of CNT30404910

Peptides detected in this lncRNA

>peptide 1 (32 aa)
TSKNTTITNMMFNITNNSSFRNRSQRKNISHH*

>peptide 2 (41 aa)
MVGVGFEHRTCSLTLSTDNSSHGGSGEGRREKVKERVFFSEG

>peptide 3 (30 aa)
MLIPERMTESYASKWCTTSWVMDNFSDNTF*

Sequence

>CNT30404910
GCACGAGCAAGAACACCACGATCACCAACATGATGTTCAACATTACAAACAACAGCTCCTTCAGGAATAGATCTCAAAGGAAGAACATTTCCCACCATTA
AATTTGCTTTCTTCCCACAATAAACAAACTGACCAGAATACATTCCTTCTGCAGCAACAAACAACTCCTTCTGATGCTTATACCTGAAAGGATGACGGAA
AGTTACGCGAGCAAGTGGTGCACCACGTCCTGGGTCATGGATAATTTCAGTGATAACACCTTTTAAGTATCCATTACGTTCACCGAAGTCAAGGGTTCGA
AACTTCGCAGCACCTTTTCTATGGTGGGTGTGGGATTTGAACACAGAACCTGCTCCCTTACGTTGAGCACGGATAACTCTTCCCATGGCGGAAGTGGTGA
AGGGAGGAGAGAGAAAGTGAAGGAGAGGGTTTTTTTTTCCGAGGGTGC