CANTATAdb - search

Detailed information on CNT30404760

BLAST search results

BLAST vs Swiss-Prot:
sp|P35100|CLPC_PEA, E-value = 1e-167

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30300179	Beta vulgaris	Triticum aestivum	45.11	33.59	80.1	392	forward
CNT30393350	Beta vulgaris	Triticum turgidum	45.11	39.16	80.61	392	forward
CNT30311864	Beta vulgaris	Camelina sativa	19.68	35.33	84.21	171	forward
CNT3062430	Beta vulgaris	Arabidopsis lyrata	34.06	25.67	80.41	296	forward
CNT30717839	Beta vulgaris	Malus domestica golden	13.35	22.83	84.48	116	forward
CNT30685087	Beta vulgaris	Triticum urartu	34.64	56.47	80.73	301	forward

Expression of CNT30404760

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKLAIGRLGSFRPTRARRIARLMASTASS*

>peptide 2 (58 aa)
SMPLVSSRLKTSFNMISAISLTSNFVSCLNTIISSNLFKNSGLKYCLSSSITRFFILL*

>peptide 3 (35 aa)
INALGFKPPENFLQHDICNLLDFQLCKLPKHNHII*

Sequence

>CNT30404760
TATCAATGCCCTTGGTTTCAAGCCGCCTGAAAACTTCCTTCAACATGATATCTGCAATCTCCTTGACTTCCAACTTTGTAAGCTGCCTAAACACAATCAT
ATCATCTAACCTATTTAAAAACTCAGGCTTAAAGTATTGCTTAAGCTCCTCAATCACCAGGTTCTTTATTCTGTTATAACTGCTGTCATGATCATTGTAA
GTTAGATCGAATCCTATACTCCGACCACCCTTTTCAATCACACTGCTTCCAATATTTGAGGTCATAATCATAAGGGTGTTCTTAAAATTTACAGTTCTGC
CCTTGCTATCGGTTAACCTTCCATCTTCAAGAATCTGAAGCATCATGTTGAAAACATCGGGATGAGCCTTTTCAATTTCATCAAAGAGGACTAGAGTATA
AGGGCGACGCCTCACCGCCTCAGTAAGCTGGCCACCTTCGGAGTAACCTACATAACCCGGAGGTGATCCGATTAACTTTGAAACCGTGTGTCTCTCCATG
AACTCGCTCATATCAAGGCGGACCATGGATTCTTCAGAACCAAAGTAGTAAGATGCTAAAGCCTTTGCAAGTTCTGACTTTCCTACACCGGTTGGACCTG
AGAAGATGAAGCTGGCAATCGGACGGTTAGGATCTTTTAGGCCAACCCGAGCACGGCGGATCGCACGGCTGATGGCTTCGACAGCTTCGTCTTGACCAAT
AACTCGGCCATGGAGGTTGTCTTCCATCTTGAGAAGACGATTTGATTCGTCAACGGAGACTTTCTGAACTGGTATACCTGTCCAAGAAAACACTATATCC
CTTATTTCTGCTTCTGTCACAACTGGTCCAACATCATCCATGTTTGCCTGTTTCATTTCCTTATTTTGG