Detailed information on CNT30404662


BLAST search results

BLAST vs Swiss-Prot:
sp|P35100|CLPC_PEA, E-value = 1e-157

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672972Beta vulgarisSetaria viridis20.9772.8982.32164forward
CNT30631438Beta vulgarisVigna unguiculata31.3337.0181.22245forward
CNT30487971Beta vulgarisOlea europaea19.0528.6581.21149forward
CNT30709232Beta vulgarisGlycine max57.2960.0581.03448forward
CNT30144776Beta vulgarisMedicago truncatula49.3629.481.35386forward
CNT30254596Beta vulgarisAvena sativa40.9224.1379.69320forward
CNT3017684Beta vulgarisZea mays35.5567.4881.29278forward
CNT3053264Beta vulgarisAmborella trichopoda26.7333.3983.25209forward
CNT30116632Beta vulgarisOryza nivara20.5942.0485.71161forward

Expression of CNT30404662

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MPLVSSRLKTSFNMISAISLTSNFVSCLNTIISSNLFKNSGLKYCLSSSITRFFILL*

>peptide 2 (66 aa)
PHDSSPQRPCSITWTITILDYSLCKTLSHLNINALGFKPPENFLQHDICNLLDFQLCKLPKHNHII*

Sequence

>CNT30404662
GCCTCATGATAGCTCGCCTCAGCGGCCTTGCTCCATAACTTGGACTATAACCATCCTCGACTACTCTCTGTGTAAAACTCTCAGTCACTTGAATATCAAT
GCCCTTGGTTTCAAGCCGCCTGAAAACTTCCTTCAACATGATATCTGCAATCTCCTTGACTTCCAACTTTGTAAGCTGCCTAAACACAATCATATCATCT
AACCTATTTAAAAACTCAGGCTTAAAGTATTGCTTAAGCTCCTCAATCACCAGGTTCTTTATTCTGTTATAACTGCTGTCGTGATCATTGTAAGTTAGAT
CGAATCCTATACTCCGACCACCCTTCTCAATCACACTGCTTCCAATATTTGAGGTCATAATCATAAGGGTGTTCTTAAAATTTACAGTTCTGCCCTTGCT
ATCGGTTAGCCTTCCATCTTCAAGAATCTGAAGCATCATGTTGAAAACATCAGGATGAGCCTTTTCAATTTCATCAAAGAGGACTAGAGTATAAGGGCGG
CGCCTCACTGCCTCAGTAAGCTGGCCACCTTCGGAGTAACCTACATAACCCGGAGGTGATCCGATTAACTTTGAAACCGTGTGTCTCTCCATGAACTCGC
TCATATCAAGGCGGACCATGGATTCTTCAGAACCAAAGTAGTAAGATGCTAAAGCCTTTGCAAGTTCTGACTTTCCTACACCGGTTGGACCTGAGAAGAT
GAAGCTGGCAATCGGACGGTTAGGATCTTTTAGGCCAACCCGAGCACGGCGGATCGCACGGCTGATGGCTTCGACAGCTTCG