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Detailed information on CNT30404571


BLAST search results

BLAST vs Swiss-Prot:
sp|Q38882|PLDA1_ARATH, E-value = 5e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30292308Beta vulgarisTriticum aestivum16.1733.283.9581forward
CNT30571726Beta vulgarisVitis vinifera20.7622.0881.73104forward
CNT3021748Beta vulgarisPopulus trichocarpa20.7611.383.65104forward

Expression of CNT30404571

Peptides detected in this lncRNA

>peptide 1 (83 aa)
YHHLSMNIDHEPSSFLCSAIISVRFRAISRLIVTWFLDLTVSKTKECKIVPGVSLDPLSSKGLNHISVHHFHSSLLPIKYSLN*

Sequence

>CNT30404571
CTATCATCATCTTAGCATGAACATAGATCATGAACCTTCGAGCTTCCTGTGCTCGGCTATAATCAGTGTTAGGTTCCGGGCTATCAGCAGGCTCATAGTC
ACCTGGTTTCTTGATCTCACGGTTTCCAAGACAAAAGAATGTAAGATAGTCCCTGGGGTCAGCCTCGATCCCCTGAGCTCGAAGGGCTTGAATCACATCA
GTGTACATCATTTCCATAGTTCTCTTCTGCCAATCAAGTATAGCCTGAACTGAAGCACTCTCGGGAAAACCCTCAGGCCACATTGGTAAAACAACATACA
CAGTGAATCTTTCATTTTTTTCAATCTTACTAACAATCTTTAAGGAAAGTTCTTTAGGAATAAGATTCAGAGCTTCAATAGCATTAGTAATAGCGTCGAA
GATGTCTTCCCAACACCGATGTGGCTCATAGTGAGTCCCACCCGAAAGAGGGATCTTAGGGACAAAGTTGTCAGGGACATGGGCATCCTGGTATAAGGTA
A