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Detailed information on CNT30404250


BLAST search results

BLAST vs Swiss-Prot:
sp|P12333|CB2A_SPIOL, E-value = 2e-150

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514140Beta vulgarisJuglans regia40.8441.979.95419forward
CNT30273807Beta vulgarisChenopodium quinoa58.5839.0884.69601forward
CNT3019671Beta vulgarisCitrullus lanatus14.2328.9184.25146forward
CNT30628736Beta vulgarisVigna unguiculata44.8362.1683.04460forward
CNT30488808Beta vulgarisOlea europaea19.0137.3683.08195forward
CNT3046617Beta vulgarisPrunus dulcis40.1659.9781.31412forward
CNT3095401Beta vulgarisSolanum tuberosum50.8853.5983.91522forward
CNT30562274Beta vulgarisActinidia chinensis48.0557.881.54493forward
CNT30173252Beta vulgarisTrifolium pratense43.0859.1782.35442forward
CNT30146311Beta vulgarisMedicago truncatula44.9350.0584.6461forward
CNT30621493Beta vulgarisCajanus cajan45.6134.8783.55468forward
CNT30355575Beta vulgarisLactuca sativa51.7582.9780.79531forward
CNT30153357Beta vulgarisPrunus persica40.1623.3381.55412forward
CNT30408205Beta vulgarisPapaver somniferum43.1843.4779.68443forward
CNT30705055Beta vulgarisPrunus avium38.462.3481.22394forward
CNT30646148Beta vulgarisCannabis sativa25.3463.7385260forward
CNT3036398Beta vulgarisCucumis melo32.6560.4779.7335forward

Expression of CNT30404250

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGQNYHQDKVGQPLHQVAHQQHDNLQQRPLK*

>peptide 2 (29 aa)
MAQRQWITSSSRFLAKVSGSAESPAVSQP*

>peptide 3 (51 aa)
MGLGFPAVFLMVILPSPRISEGVGPNLMGFPAREGEESAIVEEAIFFEKKK*

>peptide 4 (35 aa)
MGPHLKMGLSILHGLGRTMGFLMKWAWAFQLSSSW*

Sequence

>CNT30404250
AGCTTTTCCATTCAAATTTACTCTCACGACCTCACTTATTACTAATTCTTACTTAAACTCGAGTCTTGACTGAACCAAACTAATAATCAACTAACGTTCA
TACACTTAATCAAACCACAATGTTAATTAATCAAACCACAATATATAAATTAACGACGAAAATTTTCACAAAATATCAAGAGTGAGTCCCATGATTAGCA
CACAAAATACTCAATACATTAATCCATTCCATAATTTACATTAAAAAGCAATTGAAATTGAAAAGTGTCAAACATTTTTTTTTTTTCTCAAAAAACACTT
CACTTTCCAGGGACAAAGTTTGTAGCATAATTCCATGCATTATTGTTAACTGGGTCAGCAAGGTGGCCCAATGGGTCAAAACTACCACCAGGATAAAGTG
GGTCAACCACTTCACCAAGTGGCCCACCAGCAACACGATAACCTTCAACAGCGCCCATTAAAATAACTTGACAGGCCCAAATTGCAAGAATACTTTGTGC
ATGGACTAAACTTGGGTTACCCAAATAATCAAGCCCACCTTCACTAAAGATTTGTGATCCAGCTTTAAACCAAACTGCCTCACCAAATTTAACACCATTA
CGGGCCAAAAGTTCTGGGAAAACACAGCCCAATGCACCTAACATGGCCCAACGACAGTGGATCACTTCAAGTTCACGATTTTTAGCAAAAGTTTCTGGAT
CAGCTGAAAGCCCAGCAGTATCCCAACCATAATCACCAGGAAATTCACCAGTAAGATAAGATGGGGCCTCACCTGAAAATGGGCCTAAGTATTTTACACG
GTCTGGGCCGTACCATGGGCTTCCTGATGAAATGGGCTTGGGCTTTCCAGCTGTCTTCCTCATGGTAATTCTTCCCTCACCAAGAATTTCTGAGGGTGTT
GGGCCTAACTTGATGGGCTTTCCAGCAAGAGAAGGAGAAGAAAGTGCCATTGTTGAGGAAGCCATTTTTTTTGAAAAAAAAAAGTGAGGAGAGAGAAAAA
TTTATGATAGTTGTGCTATAAGTGAT