Detailed information on CNT30404182


BLAST search results

BLAST vs Swiss-Prot:
sp|O50008|METE1_ARATH, E-value = 1e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30711924Beta vulgarisGlycine max43.5741.3581.5227forward
CNT30563287Beta vulgarisActinidia chinensis39.1643.9781.86204forward
CNT30312681Beta vulgarisCamelina sativa42.4272.9482.35221forward
CNT30264951Beta vulgarisBrassica rapa40.1262.282.78209forward
CNT30129112Beta vulgarisCorymbia citriodora39.7355.6582.13207forward
CNT30478263Beta vulgarisArabidopsis halleri20.9231.583.49109forward
CNT30619828Beta vulgarisCajanus cajan24.7635.6487.6129forward
CNT30597233Beta vulgarisOryza meridionalis16.5123.3786.0586forward
CNT3027096Beta vulgarisPopulus trichocarpa40.8861.2184.04213forward
CNT3049510Beta vulgarisCucumis sativus37.8148.7681.22197forward

Expression of CNT30404182

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGHVLQLLCIDFSIPKGFQGKLQLSLRSHTGVPNNV*

>peptide 2 (55 aa)
MFLPSTTPAKRYFPEGNPPLTKSRVFVPRTRSNPKAVTPFNEVRVLYASVGISAK*

Sequence

>CNT30404182
CTGAGTCCAACTTAGTCTCATTCACCAGATCAACGGCAGTGTGAAGAAGAGAGCATGAACTGCTAAGAGAAGCAGCAAGGTCATTAGCCCAAATGTTCCT
CCCATCCACTACTCCAGCAAAAAGATACTTTCCAGAAGGAAATCCACCCTTGACCAAATCAAGGGTCTTTGTGCCCCGAACCAGATCAAATCCAAAAGCA
GTTACACCCTTCAATGAAGTAAGAGTTTTGTATGCTTCCGTGGGAATATCAGCAAAGTAGGTTTCAATGAGAACATTCAACCCTGACAAAGCGCTTTCTA
GCTCCGAGTAGGCGTGTGTGAAGGTATTACTAGGAATATACTTAATCCCAGCATCAGACATCTGTTTCCAAATAGATGTCCTTAAACTATGGGCCACGTT
TTGCAACTCCTCTGCATTGATTTTTCCATCCCAAAAGGATTCCAAGGCAAACTTCAGCTCTCTCTTAGGTCCCATACGGGGGTACCCAACAATGTGTGAT
GCCATCGTTCTTGTACTATAA