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Detailed information on CNT30404178


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673277Beta vulgarisSetaria viridis18.7531.7288.8972forward
CNT30555769Beta vulgarisOryza glaberrima22.420.2486.0586forward
CNT30440702Beta vulgarisAegilops tauschii24.7428.7984.2195forward
CNT30689646Beta vulgarisTriticum urartu24.7432.9984.2195forward
CNT30721908Beta vulgarisTriticum spelta24.7429.9784.2195forward
CNT30322845Beta vulgarisAsparagus officinalis91.4126.4178.35351forward
CNT30104304Beta vulgarisOryza rufipogon21.0922.8886.4281forward
CNT30578494Beta vulgarisOryza barthii18.492088.7371forward
CNT30118019Beta vulgarisOryza nivara18.4920.1788.7371forward
CNT30333334Beta vulgarisCynara cardunculus92.4544.4977.75355forward

Expression of CNT30404178

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGHVLQLLCIDFSIPKGFQGKLQLSLRSHTGVPNNV*

>peptide 2 (59 aa)
EPIVVVVGVKPLSHLHSRNIGITTSHRKVNIISNLSAVPSISRGNSTKHCGGVQYLIIV*

Sequence

>CNT30404178
AAGAACCAATTGTGGTGGTAGTTGGTGTCAAACCACTTAGTCATCTCCATAGCAGGAACATCGGCATTACCACGAGCCATCGAAAAGTAAACATCATTTC
CAATCTCTCCGCCGTTCCATCCATATCTAGGGGGAACAGCACCAAGCATTGCGGTGGTGTCCAATACTTGATCATAGTATGAGAAGGTATTACTAGGAAT
ATACTTAATCCCAGCATCAGACATCTGTTTCCAAATAGATGTCCTTAAACTATGGGCCACGTTTTGCAACTCCTCTGCATTGATTTTTCCATCCCAAAAG
GATTCCAAGGCAAACTTCAGCTCTCTCTTAGGTCCCATACGGGGGTACCCAACAATGTGTGATGCCATCGTTCTTGTACTATAA