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Detailed information on CNT30404176


BLAST search results

BLAST vs Swiss-Prot:
sp|P12333|CB2A_SPIOL, E-value = 5e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30173248Beta vulgarisTrifolium pratense41.9263.0785.3415forward

Expression of CNT30404176

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MFWGKKELFVCVCGWGRGDWYIKFRNLFLAKCVIVK*

>peptide 2 (31 aa)
MGQNYHQDKVGQPLHQVAHQQHDNLQQRPLK*

>peptide 3 (32 aa)
MCDCKIEHTSEDFTHIKNSFSIQIYSHDLTYY*

Sequence

>CNT30404176
GAAACTCATTAACACACTATATTCCACAAACTAAAAACCAATGAACTGTGCATACATAGTTTCTCTAATATCCTCAATTGCACCGATTATTTATAATTAA
GACTTATGTTTTGGGGGAAAAAGGAACTATTTGTGTGTGTGTGTGGGTGGGGGAGGGGGGATTGGTACATAAAGTTTAGGAATTTATTTTTAGCTAAATG
TGTGATTGTAAAATAGAGCATACTTCAGAAGATTTTACACATATAAAAAATAGCTTTTCCATTCAAATTTACTCTCACGACCTCACTTATTACTAATTCT
TACTTAAACTCGAGTCTTGACTGAACCAAACTAATAATCAACTAACGTTCATACACTTAATCAAACCACAATGTTAATTAATCAAACCACAATATATAAA
TTAACGACGAAAATTTTCACAAAATATCAAGAGTGAGTCCCATGATTAGCACACAAAATACTCAATACATTAATCCATTCCATAATTTACATTAAAAAGC
AATTGAAATTGAAAAGTGTCAAACATTTTTTTTTTTTCTCAAAAAACACTTCACTTTCCAGGGACAAAGTTTGTAGCATAATTCCATGCATTATTGTTAA
CTGGGTCAGCAAGGTGGTCAGCAAGATTCTCAATTGGGCCTTTTCCAGTAACAATAGCCAATCTACCATTCTTAATTTCCTTAACTTTCAACTCAGCAAA
AGCTTCTGGATCATCAGCAAGGCCCAATGGGTCAAAACTACCACCAGGATAAAGTGGGTCAACCACTTCACCAAGTGGCCCACCAGCAACACGATAACCT
TCAACAGCGCCCATTAAAATAACTTGACAGGCCCAAATTGCAAGAATACTTTGTGCATGGACTAAACTTGGGTTACCCAAATAATCAAGCCCACCTTCAC
TAAAGATTTGTGATCCAGCTTTAAACCAAACTGCCTCACCAAATTTAACACCATTACGGGCCAAAATTTCTGGATCAGCTGAAAGCCCAG