Detailed information on CNT30404043


BLAST search results

BLAST vs Swiss-Prot:
sp|P12333|CB2A_SPIOL, E-value = 2e-125

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3070976Beta vulgarisQuercus suber20.0443.582.35221forward
CNT30380492Beta vulgarisManihot esculenta20.7631.2884.72229forward
CNT30525395Beta vulgarisPhaseolus vulgaris47.9651.9180.91529forward
CNT30200456Beta vulgarisPisum sativum21.1258.6983.69233forward
CNT30504491Beta vulgarisNicotiana attenuata46.8754.5483.17517forward
CNT3046618Beta vulgarisPrunus dulcis44.3358.4980.57489forward
CNT30633518Beta vulgarisCapsicum annuum46.8756.5682.21517forward
CNT3091167Beta vulgarisSolanum tuberosum47.641.8783.81525forward
CNT30234848Beta vulgarisBrassica oleracea16.0527.5383.62177forward
CNT30173249Beta vulgarisTrifolium pratense47.3355.0682.76522forward
CNT30146374Beta vulgarisMedicago truncatula47.9656.2883.74529forward
CNT30204126Beta vulgarisHelianthus annuus11.3324.4188125forward
CNT30357114Beta vulgarisLactuca sativa41.6150.2283.22459forward
CNT30429177Beta vulgarisPapaver somniferum40.9834.5879.42452forward
CNT30337693Beta vulgarisCynara cardunculus41.6161.1282.57459forward

Expression of CNT30404043

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MCDCKIEHTSEDFTHIKNSFSIQIYSHDLTYY*

>peptide 2 (36 aa)
MFWGKKELFVCVCGWGRGDWYIKFRNLFLAKCVIVK*

>peptide 3 (31 aa)
MGQNYHQDKVGQPLHQVAHQQHDNLQQRPLK*

Sequence

>CNT30404043
GAAACTCATTAACACACTATATTCCACAAACTAAAAACCAATGAACTGTGCATACATAGTTTCTCTAATATCCTCAATTGCACCGATTATTTATAATTAA
GACTTATGTTTTGGGGGAAAAAGGAACTATTTGTGTGTGTGTGTGGGTGGGGGAGGGGGGATTGGTACATAAAGTTTAGGAATTTATTTTTAGCTAAATG
TGTGATTGTAAAATAGAGCATACTTCAGAAGATTTTACACATATAAAAAATAGCTTTTCCATTCAAATTTACTCTCACGACCTCACTTATTACTAATTCT
TACTTAAACTCGAGTCTTGACTGAACCAAACTAATAATCAACTAACGTTCATACACTTAATCAAACCACAATGTTAATTAATCAAACCACAATATATAAA
TTAACGACGAAAATTTTCACAAAATATCAAGAGTGAGTCCCATGATTAGCACACAAAATACTCAATACATTAATCCATTCCATAATTTACATTAAAAAGC
AATTGAAATTGAAAAGTGTCAAACATTTTTTTTTTTTCTCAAAAAACACTTCACTTTCCAGGGACAAAGTTTGTAGCATAATTCCATGCATTATTGTTAA
CTGGGTCAGCAAGGTGGTCAGCAAGATTCTCAATTGGGCCTTTTCCAGTAACAATAGCTTGAACAAAAAATCCAAACATTGAAAACATAGCCAATCTACC
ATTCTTAATTTCCTTAACTTTCAACTCAGCAAAAGCTTCTGGATCATCAGCAAGGCCCAATGGGTCAAAACTACCACCAGGATAAAGTGGGTCAACCACT
TCACCAAGTGGCCCACCAGCAACACGATAACCTTCAACAGCGCCCATTAAAATAACTTGACAGGCCCAAATTGCAAGAATACTTTGTGCATGGACTAAAC
TTGGGTTACCCAAATAATCAAGCCCACCTTCACTAAAGATTTGTGATCCAGCTTTAAACCAAACTGCCTCACCAAATTTAACACCATTACGGGCCAAAAG
TTCTGGGAAAACACAGCCCAATGCACCTAACATGGCCCAACGACAGTGGATCACTTCAAGTTCACGATTTTTAGCAAAACTGTCTTCCTCATGGTAATTC
TTC