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Detailed information on CNT30403830


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LU44|SF1_ARATH, E-value = 1e-166

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3042609Beta vulgarisPrunus dulcis12.4136.2880.77156forward
CNT30464818Beta vulgarisSaccharum spontaneum22.8313.3682.58287forward

Expression of CNT30403830

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MCIATIASTLPGRIASSTTRTSWRRRAISISQ*

>peptide 2 (44 aa)
MEGDTEHHKGAMTDSEQEDNNLTQVVEEDRQRKEEEGLEVSQQL*

>peptide 3 (85 aa)
MSTITTNLTQHITLKRASPRRTGILPVTRLTTQPTKLFIPNSSIESSKLPELLPLMLIKHFIHRLQQLLHHSSSSLKRVWSISLN*

>peptide 4 (45 aa)
CQNKKNHFISAMNFSYSASTPWFVFSTAGGAGGFEAQGTFDMLCG*

Sequence

>CNT30403830
ATGCCAAAATAAAAAAAATCATTTCATCTCTGCCATGAACTTTTCATACTCCGCGTCAACTCCGTGGTTTGTCTTTTCAACAGCTGGTGGTGCTGGAGGA
TTTGAAGCCCAAGGGACGTTTGACATGCTCTGTGGCTGATCAGCAGGAGGGGGAGGAGGAGGTGCCCCGTAATAAGGTGGATAGCCATAAGAAGAGGGCA
AGTAGGTAGGTTGTGCAGATGGAGGGGGATACTGAACACCATAAGGGGGCAATGACTGATTCTGAACAGGAGGATAATAATTTGACCCAGGTGGTGGAGG
AGGATAGGCAGCGTAAGGAGGAGGAGGGACTGGAGGTTTCCCAGCAACTCTAACTGCAATAGTTCGGCCATCTAGGCGATAGCCATTCATACCATTTATG
GCCGTATTAGCCTGCTCAACATTCGAATACTTCACAAAACCATACCCTTTGCTCAGCTGAGTAACTCGGTCTTTGATAACCTTGGCCATCACGATTTCAC
CGAACGGAGAGAATAGGCGTATCAAGCCATCATCCTCAAGTGTAGGTGGCAAGTAGCCGATATACAAGTTAGTGTCATCGTACTCTTTTGGTTTAAGAAG
ATTAGAACCCAAACCCGCATGTGCATTGCCACCATTGCTTCCACTTTGCCAGGGCGGATTGCTTCTAGCACCACCAGAACCAGCTGGCGAAGAAGAGCCA
TCAGCATTAGCCAATGAATCAGGGACTGTACCACCTAACTCTGCCAAAAAGTTCCGGTACTCATCATCCATCTTTTTCCCAGTTGTCCCTTTAACTGGAC
AATCAATAGTGGGATGTCCACCATCACCACAAATCTTACACAGCACATCACTCTTAAACGTGCTAGTCCTAGAAGGACAGGCATACTGCCGGTGACCAGG
CTCACCACACAGCCTACAAAACTCTTCATCCCTAATAGTTCCATTGAGAGCAGCAAGCTCCCTGAGCTGCTGCCTCTTATGCTCATTAAGCACTTCATCC
ACCGGCTGCAACAGCTTCTCCACCATAGCAGCAGCAGCCTCAAGAGAGTCTGGAGTATCAGCCTCAACTAAAACATGTAAATCTTCATTCTCAGAAGGAT
CAGGTTTCAAATTTTGCTTCTGCTGCAACCGCCCTTCCTTAACAGACCCCTTACCCCGAATCACAATCTTCGCCCCAGTCTCCTTCTCCATCCGTTTCTG
AGTATTCCCCCTCGGCCCAATAATTAACCCAATAAAATTATAACCAGGGAACTCTTT