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Detailed information on CNT3040359


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672414Marchantia polymorphaSetaria viridis16.9621.1782.68127forward
CNT30521103Marchantia polymorphaSetaria italica16.9621.7182.68127forward
CNT30182270Marchantia polymorphaSecale cereale17.2223.3781.4129forward
CNT30292897Marchantia polymorphaTriticum aestivum17.2221.981.4129forward
CNT30222663Marchantia polymorphaHordeum vulgare17.2225.4981.4129forward
CNT30249690Marchantia polymorphaAvena sativa17.2221.1184.5129forward
CNT30454500Marchantia polymorphaSaccharum spontaneum14.9530.9483.93112forward
CNT30135064Marchantia polymorphaLolium perenne17.2222.5982.17129forward
CNT304795Marchantia polymorphaZea mays14.9524.7883.93112forward
CNT30720963Marchantia polymorphaTriticum spelta17.2223.1681.4129forward
CNT30344813Marchantia polymorphaEragrostis tef14.2920.4684.11107forward
CNT3027985Marchantia polymorphaTheobroma cacao18.4225.4181.16138forward
CNT30578384Marchantia polymorphaOryza barthii14.6928.0683.64110forward
CNT30582394Marchantia polymorphaEchinochloa crusgalli14.6929.4983.64110forward
CNT30557050Marchantia polymorphaPanicum hallii16.9633.4281.89127forward

Expression of CNT3040359

Peptides detected in this lncRNA

>peptide 1 (83 aa)
FLFFYAQVIVANLLEYESDQGTLKLNSTNRVLDQLNRRLRGKFSPLCHQRRRLNIPYNIHRTLAPDRPGESLAQEKTCVQSAI*

>peptide 2 (44 aa)
MCTKCNLEEIISTRDGLEITDHQKPTDPVSTSSLLVKRDLSQLT*

Sequence

>CNT3040359
TTTTTATTTTTTTATGCTCAAGTGATAGTTGCCAATTTACTGGAGTACGAATCAGATCAAGGCACATTGAAGTTAAATTCGACGAATAGGGTCCTGGATC
AGCTGAACAGGAGGCTAAGAGGAAAGTTTTCTCCCCTTTGTCATCAAAGACGACGTTTGAATATCCCTTACAACATTCACAGAACACTAGCGCCTGACCG
TCCAGGAGAATCTCTAGCCCAGGAAAAAACATGTGTACAAAGTGCAATTTAGAGGAAATTATCAGTACAAGGGACGGCCTCGAGATCACGGACCATCAGA
AGCCAACGGATCCCGTCAGCACTTCGAGCTTGCTCGTCAAGAGAGATCTGTCTCAACTTACTTAACGAAGTATGGCAGGTTGACGACGTAGAGGAGGAAG
TAAGCCCAGTAGACACCGGACAAGCCACCGAAGAAGAATCCTCCTGAGAAGCTAGCCCATCCCTGGGCGGTCTGGAGCTTGTCGGCCTCCTTCTTCCTTC
CGCTCAGGGTCAAGCTCGGGGCGATGGAGGCAGACCTGAACCTCAGAGGGGCAGCGGAGCCCACGAACGAGCTGCGCACCACATTCTTCGTGGCAGTTTG
CTGAAGGGACAGCAACCCACCGGCCCTCACCATAGCTGCGGTTGCCATCTTCGCTCAAACTGTTCGACCGATCTCGCTTGCCAGTTCAATCGAGCTCACT
CACTCTCTTCGTATCTCCCTCAGTGGACAGCAGAATCTCTGCGTCTTCT