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Detailed information on CNT30403408


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LU44|SF1_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30275523Beta vulgarisChenopodium quinoa14.5332.8988.39224forward

Expression of CNT30403408

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MNFSYSASTPWFVFSTAGGAGGFEAQGTFDMLCG*

>peptide 2 (32 aa)
MCIATIASTLPGRIASSTTRTSWRRRAISISQ*

>peptide 3 (85 aa)
MSTITTNLTQHITLKRASPRRTGILPVTRLTTQPTKLFIPNSSIESSKLPELLPLMLIKHFIHRLQQLLHHSSSSLKRVWSISLN*

Sequence

>CNT30403408
GAACCATATTTTACACTTGTTAGCCAATAGAATAAATGAAATTGAATGTCTATAAAACAAAGACAGCACCAAAGAGATTAGCATAGTTGAAGATGAGTAA
CAATAAGTGTACCTCTTTGCAATGAAGACGTATGCCAAAATAAAAAAAATCATTTCATCTCTGCCATGAACTTTTCATACTCCGCGTCAACTCCGTGGTT
TGTCTTTTCAACAGCTGGTGGTGCTGGAGGATTTGAAGCCCAAGGGACGTTTGACATGCTCTGTGGCTGATCAGCAGGAGGGGGAGGAGGAGGTTTCCCA
GCAACTCTAACTGCAATAGTTCGGCCATCTAGGCGATAGCCATTCATACCATTTATGGCCGTATTAGCCTGCTCAACATTCGAATACTTCACAAAACCAT
ACCCTTTGCTCAGCTGAGTAACTCGGTCTTTGATAACCTTGGCCATCACGATTTCACCGAACGGAGAGAATAGGCGTATCAAGCCATCATCCTCAAGTGT
AGGTGGCAAGTAGCCGATATACAAGTTAGTGTCATCGTACTCTTTTGGTTTAAGAAGATTAGAACCCAAACCCGCATGTGCATTGCCACCATTGCTTCCA
CTTTGCCAGGGCGGATTGCTTCTAGCACCACCAGAACCAGCTGGCGAAGAAGAGCCATCAGCATTAGCCAATGAATCAGGGACTGTACCACCTAACTCTG
CCAAAAAGTTCCGGTACTCATCATCCATCTTTTTCCCAGTTGTCCCTTTAACTGGACAATCAATAGTGGGATGTCCACCATCACCACAAATCTTACACAG
CACATCACTCTTAAACGTGCTAGTCCTAGAAGGACAGGCATACTGCCGGTGACCAGGCTCACCACACAGCCTACAAAACTCTTCATCCCTAATAGTTCCA
TTGAGAGCAGCAAGCTCCCTGAGCTGCTGCCTCTTATGCTCATTAAGCACTTCATCCACCGGCTGCAACAGCTTCTCCACCATAGCAGCAGCAGCCTCAA
GAGAGTCTGGAGTATCAGCCTCAACTAAAACATGTAAATCTTCATTCTCAGAAGGATCAGGTTTCAAATTTTGCTTCTGCTGCAACCGCCCTTCCTTAAC
AGACCCCTTACCCCGAATCACAATCTTCGCCCCAGTCTCCTTCTCCATCCGTTTCTGAGTATTCCCCCTCGGCCCAATAATTAACCCAATAAAATTATAA
CCAGGGAACTCTTTCTGGGGAATGTAAAGCTTCTTATGCAGCTTAGGTGGCCGGTAATCAGCCGGAGGCTTAAAAGCCGGATTCTTCTTAATAATCTGTG
ATATAATCTCCTGTCTCTCTCTATTCAATTTCTCACGAGCTCGATACTCCCTAGTATTAATCCTAATTCCCATATTATCATAAACCGGTTCGGGGGACGG
GGATCTAGCACCCTCAGGTCTATCATCTAACGGCAAACCAGATTGCAATTTCCTGCTAATTTCAAGTAGTCTACTATTCAAAGACTGAACTTCAGGATCA
AATTCAATACCTCCCATGAAATCAGGCAACTGATACACCGGT