Detailed information on CNT30403349


BLAST search results

BLAST vs Swiss-Prot:
sp|C1KEU0|METE_KALTU, E-value = 1e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673222Beta vulgarisSetaria viridis64.3735.587.05224forward
CNT30521178Beta vulgarisSetaria italica23.8516.9790.3683forward
CNT30513228Beta vulgarisJuglans regia40.2317.9990.71140forward
CNT30375849Beta vulgarisArabidopsis thaliana56.6117.5988.83197forward
CNT30249492Beta vulgarisAvena sativa25.5726.185.3989forward
CNT30136078Beta vulgarisLolium perenne59.4879.9285.02207forward
CNT309700Beta vulgarisZea mays22.1323.7785.7177forward
CNT30211728Beta vulgarisHelianthus annuus31.942.0585.59111forward
CNT30689645Beta vulgarisTriticum urartu23.2819.0687.6581forward
CNT30721247Beta vulgarisTriticum spelta55.4636.7682.9193forward
CNT30367289Beta vulgarisSorghum bicolor57.4735.0989200forward
CNT3022975Beta vulgarisPopulus trichocarpa52.0126.9386.74181forward
CNT30148668Beta vulgarisBrachypodium distachyon60.3468.8584.76210forward
CNT30118099Beta vulgarisOryza nivara54.623.3186.84190forward

Expression of CNT30403349

Peptides detected in this lncRNA

>peptide 1 (42 aa)
LQNCKHFPDAISNFLSGWDPWGVNVVDTRANTSTVLNSLTEN*

Sequence

>CNT30403349
GACTCCAAAACTGCAAGCATTTTCCTGATGCGATCAGCAATTTCCTCAGTGGGTGGGATCCTTGGGGAGTGAATGTCGTAGACACCAGGGCCAATACCAG
CACCGTACTTAACTCCCTCACGGAAAACTGAGAGAAGCTTCTCGTCAGAACGAGAGTTCTCAATGGTGATGACATCAGCATCCATGTCAATGATAGAGTG
AATGATGTCATTGAAGTTAGAGTAGCACATGTGGGTATTTGTCTGAGGGAAATCCACCCTTAATCAATTCTAGAGACTGTGTTCCACGAATCAAATCAAA
CCCAAATCCAGTGACACCCTTCAAAGAGATAAGGGTCTTGTATGCCTC