Detailed information on CNT30403312


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691007Beta vulgarisOryza sativa2.3422.4187.580forward
CNT30145113Beta vulgarisMedicago truncatula2.42586.5982forward
CNT304877Beta vulgarisZea mays2.436.7787.882forward
CNT3067750Beta vulgarisLeersia perrieri2.5232.2187.2186forward
CNT30101172Beta vulgarisOryza rufipogon2.3421.887.580forward

Expression of CNT30403312

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MFPLTYTFNLKCIADDFLGKRDRQSGNQL*

>peptide 2 (44 aa)
MTTLSTMNINVLIINGETFCNNLPQDNLRHKSFEPNKDTIIYYA*

>peptide 3 (50 aa)
MAPVTEIIRYPAFFSGPGTLIPGTWYMATFTFHVPWDASQKAERGTWHMV*

>peptide 4 (33 aa)
MQKKRFSIDSNAVPIYGIGIEEEEKPRILSQQV*

>peptide 5 (39 aa)
MLKTIVIHYICSLHIVPLLKYRLEVGKRGKGNHKPLILS*

>peptide 6 (32 aa)
MQPNSCRSRNNGIDSCRRKGSLLIQTLYLSMG*

>peptide 7 (32 aa)
MWSRKYMLQKGLRSVRILIMQESIFRVFLKGF*

>peptide 8 (30 aa)
MLLCGEIIDKSSYQQSTSRVKSGNMCQQVM*

>peptide 9 (30 aa)
MVSGRVYCRFVAGAFRFRSCVGLVLIRSRQ*

>peptide 10 (57 aa)
MFPMISKASFPNLMLCVHACRVVKASEFLNCIVKSQARRNQTWHKISKFLSLALKLV*

>peptide 11 (55 aa)
MAQNFKISKLGTKVSLRSEHLLYIKASPKGNLPHSQMPSLFQKRANFRGAKKDIL*

>peptide 12 (66 aa)
MPALLLANEQYIISSRVLFENGKILHMEVYAKTSIIFTVHIEVLNTYIRVRPPTLSSFSLMMNNKS*

>peptide 13 (59 aa)
MEKHFVIICHKTICATSLLNPIKTPLYIMPRTVNSVTRVRFRSGHLRFQVMFGQVVSGH*

Sequence

>CNT30403312
TTTCCAGGACCGTTACAGCGACAGCAGCCACATTAGCACTTGCATAGTCATTTCAAATAGACTAGATATTTGAGTGCAGCATTCTTGAGGTTAAAGTTAA
ACCTAGTTTCAAAGACAACGAAGCAACTACTGTAATTCCATCAAATATTGAATGGTTTGTCATTAGCAATAACGAATTTCTAGTTTTATCAACGGGAAAA
GCAAATGAGCAAATTGCGTAGTCTAATCCAGGACATAAATCAATCTTGAAGATTAGGAAAGAGAGCAATAGAATCTTTTGCTTTTCAAAAAATGCAACCA
ATCAAGCCCTCGAGTAGTCGAGTACAATAAAGAGAAATGAATTTCTTGAGTGAGGTGTGTGGGAGTTAGTCATATAATAGGTAAAATGAATTCCAATGCA
TTACTGTTTAACCGTTTGTTCTAGGTGATAAGTTAAAAACTAAAACTTTAAGGCGAGTCTATACTCTAAACTGTATAGTTAATTGATCACGCACAAAAAC
GTTTTTAGAGTCTATTTTAGGGGGCTATAGGAGCCATGTGGTCTAGAAAATACATGTTACAAAAAGGATTAAGAAGTGTACGCATATTGATCATGCAGGA
AAGCATTTTTAGAGTATTTCTTAAGGGGTTCTAGGAGCCATGTCTAACTCTAGAAAATACATCTTTCCAAATAAAAAGGAATTCTTTAGGAGAATGGTAG
AATAATACGCCTGGATTGTCCCAGGGTTAATTCTAGCACATCTCCTTGCTGATGAATCCTACACAAATAACAACTCATTTCAACAGCTAGCATGTTCCCT
ATGATAAGTAAAGCTTCTTTCCCTAATCTCATGCTTTGTGTGCATGCATGCCGGGTCGTTAAGGCATCCGAATTCTTGAACTGCATAGTAAAATCGCAAG
CTAGGCGTAATCAAACATGGCACAAAATTTCAAAATTTCTAAGCTTGGCACTAAAGTTAGTTTAAGATCTGAACATTTGTTATACATAAAAGCTTCGCCA
AAAGGAAACCTTCCACATAGCCAAATGCCTTCTTTATTCCAGAAAAGAGCAAATTTCAGAGGAGCTAAAAAGGATATTCTGTAATAGTAATTTTCACTAT
TCAAATTCAATTCGTGTTCTTTTAAGCATACTTGGAGGATAAGGATAAATATTATAATTTCTTTGGCTCATGATTTAATCTAGTTGGTTTCTTTCAAATG
TTTATGTTTTGTGGGTGGCATAATCTTGAATAAACCAGGAGGAATTGTGACTTGTTTTTCAAGACATCTGACTTAGTTTTCTCGAAGGCATGCCCTTTGG
AGATAAATGTGGTGAAAGTCTATCTTAGGTGCTACACATATGAACGATCAAATAGTCCATCAGAAGCAAGAACTGATCTTGCTTCAAAGGCCTTCCATGT
GATATAATGACAACTCTTTCAACAATGAACATTAACGTATTAATCATTAATGGAGAAACATTTTGTAATAATTTGCCACAAGACAATCTGCGCCACAAGT
CTTTTGAACCCAATAAAGACACCATTATATATTATGCCTAGAACTGTCAATTCAGTTACTCGAGTCAGGTTCAGGTCGGGTCATCTCAGGTTTCAGGTCA
TGTTCGGTCAGGTCGTGTCAGGTCATTAAATCAAACAGGCCGGGTGCAAGTCGGGAACGGTCACAATTCGGTCAGGTTTGTCTCGGTTCATTTCTTCTTT
CAGGTTCGGTCGGATTCTGCGCGGTCAATTTCGAGGCAAGTCATCTTTCGTGAACATATGGTGTCGGGTCGGGTTTATTGCAGGTTTGTAGCGGGTGCTT
TCAGGTTCAGGTCATGCGTGGGTCTAGTACTTATCAGGTCTAGACAATAACGGTTTGGGTCAGTTTCGAGACGAGTTCAGATTTGTAGTTATCGGGTTGT
ACCATACTTGATTTCAGGTCACTTTCGGGTCGCTTCGAGCACGGAACATGTCATGAATTTTATGTGGTGTTGCTTCAAATTTGTATCATTATTTAAGATT
TCATTGAAAAGCAATGCTTGAATAGTCATCTAGTTATATACCTTTTTATAGTAGTGTTATATGATTTATGTTATTATGTGGTGAAATAATTGACAAGTCG
AGTTATCAGCAATCAACAAGTCGGGTAAAATCGGGTAACATGTGCCAACAAGTCATGTAAAATAATGTACCACATTGTATAACCACTCATCAACCGATGT
CGCTTCCCATATTGGATAAAAATGCAACCCAATAGCTGCAGAAGTAGGAATAATGGCATCGATTCATGCAGAAGAAAAGGTTCTCTATTGATTCAAACGC
TGTACCTATCTATGGGATAGGGATAGAGGAAGAGGAAAAACCGAGGATTTTGTCGCAACAGGTTTAATAAAATCAGGTAACGGGTCGCAACAGGTCGGGT
TGATGACAAGTTACGTCGAGTTATAATCAGTTTCAAGTCCTAATCAGGTGTCGAATTGAGTTCAGATCGTTGTCAGGTCAGATCATTTCAGTTATCGGTC
TTTTTTGGACGGGTATCGGTTCAGGTCATAGAGTATCGCCGTCAAGAACAGGTATCAGTTATTATCAGGTCGGGTACAGGTCAGGTTACAGGTGACCTAT
TTTGCCAAAATTTCAGGTACAAGTCAGATACAGGTCGTTACAGGTTCAGGTCGGGTTATCAGATCAGGTCATTTTTTGACAGCTCTAATTATGCCTGCAT
TATTACTAGCTAATGAGCAATACATTATTTCATCAAGAGTTCTCTTCGAAAATGGAAAAATCCTACACATGGAAGTATATGCCAAAACCAGTATAATCTT
TACTGTCCATATTGAAGTACTGAATACCTACATTAGAGTTCGTCCACCAACTCTTTCTTCTTTCTCCCTCATGATGAACAACAAAAGTTAAATCAAGAGA
TGTTTCCTTTAACCTACACTTTCAATCTCAAATGCATTGCTGATGATTTCTTAGGAAAACGTGACAGACAATCAGGCAATCAGCTGTAAAAAAATCAATC
ATATATTGACTTTCATGTTGAAAACAATTGTAATTCATTATATCTGCAGTTTGCACATAGTTCCACTTCTTAAGTATCGCTTGGAAGTAGGGAAGAGAGG
AAAGGGAAACCACAAACCTTTGATTCTTAGCTGAGATACATATAATAGTCAACTACTTAAGAAATGGCTCCAGTAACAGAGATTATCAGGTATCCAGCTT
TCTTTAGTGGACCCGGAACATTGATACCGGGAACGTGGTACATGGCCACGTTCACGTTCCACGTTCCATGGGATGCGTCCCAGAAAGCAGAACGTGGTAC
GTGGCACATGGTCTAGGAGTCCATCTGGTTTAATCTAGAGGCTGTGTTCCGTTTTCCCGTTTCCATACCACATTCCGGGACGTTCGGCGTTCCATGTAAC
AATGACCCGGAAAGACA