Detailed information on CNT30403132


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42662|METE_PLESU, E-value = 4e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534084Beta vulgarisEucalyptus grandis61.0696.0889.8196forward
CNT3096726Beta vulgarisSolanum tuberosum68.5492.8382.73220forward
CNT30194314Beta vulgarisSecale cereale19.6325.9387.363reverse complement
CNT30137932Beta vulgarisLolium perenne66.9885.3282.33215forward
CNT30650401Beta vulgarisRosa chinensis59.521.6892.67191forward
CNT30717191Beta vulgarisMalus domestica golden13.7121.8993.1844forward
CNT30624889Beta vulgarisDaucus carota39.8833.6890.62128forward
CNT30721902Beta vulgarisTriticum spelta27.4143.3588.6488forward
CNT30361575Beta vulgarisSorghum bicolor42.6821.4482.48137forward
CNT3024604Beta vulgarisPopulus trichocarpa57.3218.9583.7184forward
CNT30604869Beta vulgarisOryza punctata38.9447.8987.2125forward

Expression of CNT30403132

Peptides detected in this lncRNA

>peptide 1 (31 aa)
SYLGWSFRTKDQLRMVTGPVSIPFIGREVML*

>peptide 2 (35 aa)
VIPGLVISDKGPVEDGNRSCKHTLHWAGSHALSSG*

Sequence

>CNT30403132
GTCATACCTGGGTTGGTCATTTCGGACAAAGGACCAGTTGAGGATGGTAACAGGTCCTGTAAGCATACCCTTCATTGGGCGGGAAGTCATGCTTTGAGCA
GCGGATGACCAGAACACAGTCATTGGGTTGGGGCGGCTGACATCACCATAGATAATTGGTGGCTTCACACAGCGAGATCCGTAAGATTGCACCCACCCAT
TTACTGTGAAGGCAAAACCAGACAACTGCTCTCCGTGAACGAGAACATCAATGTCAAGTTCTTCTTGGAGCTTTACAACCTTGTTGATCTCCTCCTTGAT
GGCCTTGACATACTCTTCCTC