Detailed information on CNT30402985


BLAST search results

BLAST vs Swiss-Prot:
sp|P31542|CLPAB_SOLLC, E-value = 8e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672484Beta vulgarisSetaria viridis35.4132.384125forward
CNT30272384Beta vulgarisChenopodium quinoa91.2230.1295.65322forward
CNT30561426Beta vulgarisActinidia chinensis43.912181.94155forward
CNT30207996Beta vulgarisHelianthus annuus89.2470.7981.27315forward
CNT3037990Beta vulgarisCucumis melo22.6626.8586.2580forward

Expression of CNT30402985

Peptides detected in this lncRNA

>peptide 1 (40 aa)
SDFPTPVGPEKMKLAIGRLGFLRPTRARRMARLMALTASS*

Sequence

>CNT30402985
TTCAGACTTTCCAACACCAGTTGGACCTGAAAAGATGAAGCTTGCAATTGGACGGTTGGGGTTCTTGAGGCCAACACGAGCACGACGGATGGCACGGCTA
ATGGCTTTAACAGCTTCATCTTGACCAATAACTCTCGTATGAAGTGTTTCCTCCATTTTGAGAAGACGGTCAGATTCATCTGTAGACACTTTCTCAACTG
GAATACCAGTCCAAGATGACACTATGTGCTGAATATCTGTTTCTGTGACAATAGGACCGACATCCCCAGCTTCTGTCTCTGCCTTGCTCATTTCCTTGTT
CTTTTCTATAAGAGCACTGATTTGGGCCTTGAGGTCCATTTCTCTGTCACGCA