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Detailed information on CNT30402950


BLAST search results

BLAST vs Swiss-Prot:
sp|P24794|COX1_BETVU, E-value = 4e-124

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187765Beta vulgarisSecale cereale41.3461.3286.31482forward
CNT30605231Beta vulgarisGossypium raimondii62.9519.6392.92734forward
CNT30682285Beta vulgarisTriticum urartu63.559.4688.93741forward

Expression of CNT30402950

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRRSIPESPKKCMGKKVRLTPKIVIQKWI*

>peptide 2 (40 aa)
MHGEEGKINPENSDPKMDLTRIFRVCSTKVFAHPIVKSYK*

>peptide 3 (40 aa)
MSSLELARTIPVSPPTVNKKMNPTANNMGVLYCIEPPPTW*

Sequence

>CNT30402950
AAGCGCGTTGCCCTCCTAGGTGCGCAACACTAAGTAATCCAAGCCAACCCACATTACTGACTAACGGTGGATAATCATATTTCTTAGAGGTACTAAAAAT
AACTCCATGAATTAGCAAAATGAAGGTTGAATTAATGAGAAAGATCTCTGGGGAAACCGCTAAAAAAAGATTGAACATGTGAGAGGATCTGAACGAATTC
CGCTTTCATTTCCCCCATATAGAGCACTGAGTTACTAAGGTTAAGGTCTTCATCCCACAATGAGGTCTTTTCGGAATGCCATGATCTCTTTTTAGAACGT
AGAAAGGGAGGGAATTCAAAAAAGTCACTCTTTCCAACCTTAGAAAAACAAGAAGTTCTGTTAGGTTCTCAGTTGCTTTTCGTCTCCTTCGTCTCTTTCA
TTTTAAAAAGTTTTCTTTTACTTTAGCTTTTGGTCTCCTTAATAGCTGGAAGTTCTCCAAAAGTGTGAAAATTAGGAGGACTTTGTACCATCCATTCCAG
TGTGGTTGAATTCTCTTCAACAGCCCATGGACTTGGATCACATCTTTTGTTCTTTCCACTACTTAAAGTGATTGTTGTTACGACCACGAAGAAACAATAA
ATCCCAACTACAGACATATAAGAGCCAAAACTGCTAAGGGCTTCCATCCTGCGTAAGCATCTGGATTATCGGGAATGCGACGTAGCATACCCGAAAGCCC
TAAAAAATGCATGGGGAAGAAGGTAAGATTAACCCCGAAAATAGTGATCCAAAAATGGATTTGACCAGAATTTTTAGGGTATGTTCGACCAAAGTTTTTG
CCCACCCAATAGTAAAATCCTACAAATAAAGCAAAAACGGCTCCCATAGAAAGTACATAATGGAAATGTGCAGCCACATAATAAGTGTCATGTAGAGCAA
TGTCTAGCCTAGAATTAGCCAGGACTATTCCAGTGAGTCCTCCTACGGTGAACAAAAAGATGAACCCTACAGCAAATAACATGGGTGTTTTGTATTGTAT
CGAACCCCCCCCCACATGGTAGCGATCCAACTAAAGAATTTAATTCCAGTGGGGACCGCTATGATCATGGTAGCTGCGGTGAAGTAAGCACGAGTATCAA
TGTCTAAGCCCACAGTAAACATATGATGAGCCCAAACAAGAAATCCAAGAACACCTATACTGATCC