Detailed information on CNT30402924


BLAST search results

BLAST vs Swiss-Prot:
sp|O80337|EF100_ARATH, E-value = 1e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101508Beta vulgarisOryza rufipogon11.1429.1285.5376forward

Expression of CNT30402924

Peptides detected in this lncRNA

>peptide 1 (95 aa)
PTCPTTLPFFLLLGDPLSDDVHDDDESDDVLLSGDDRFEVIRTGSGSPELIRSGKFSNAFEPRIRNVPSQTRAPFLAGSRISAANFPHGRLRTPR*

>peptide 2 (39 aa)
MLPPYRSRHRHGGRRGFTAGDSHRRFHRLRLDHHRRRRT*

>peptide 3 (39 aa)
MAAFGHPDNASPLSEPPSPWWPPGLHRRRLSPEIPPAPT*

>peptide 4 (39 aa)
QLVQPHSLSFFFWGTHYLMTYTMMTKVMTCFSRVMIALK*

>peptide 5 (42 aa)
MVAAGASPPATLTGDSTGSDLTTTGAGEPESISDPDSGDHPV*

Sequence

>CNT30402924
CCAACTTGTCCAACCACACTCCCTTTCTTTCTTCTTTTGGGGGACCCATTATCTGATGACGTACACGATGATGACGAAAGTGATGACGTGCTTCTCTCGG
GTGATGATCGCTTTGAAGTGATCCGAACCGGGTCGGGCTCACCCGAGTTGATTCGGAGTGGAAAATTTAGCAACGCCTTCGAGCCGCGCATCCGGAACGT
TCCGAGCCAAACCCGAGCCCCGTTCTTAGCCGGGTCTCGGATCTCCGCCGCAAACTTCCCCCATGGCCGCCTTCGGACACCCCGATAATGCTTCCCCCTT
ATCGGAGCCGCCATCGCCATGGTGGCCGCCGGGGCTTCACCGCCGGCGACTCTCACCGGAGATTCCACCGGCTCCGACTTGACCACCACCGGCGCCGGCG
AACCTGAGTCGATTTCCGACCCGGATTCCGGCGACCACCCGGTGTGAACGGCGTCTCGGAGAACCCCAAAAACAACCATATCTTCAGAATCATCTTCTTT
TAATGGTAATTCACCCCAATTATCAGTTAAACAAGGGTATAACCTACTAAAGCTGGAATTCCGGCGATAAATTGGGCCTGATCCTGTCGCCATAAACGAA
GCTCCGGCGATTCTTGGATCCCAATCTTCTAGTAAGTGACGCTTGATCGACTCAAGAACTGCTAAGTCGGTTTCAAAATTAC