CANTATAdb - search

Detailed information on CNT30402836

BLAST search results

BLAST vs Swiss-Prot:
sp|A2YWQ1|HSP81_ORYSI, E-value = 5e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30635894	Beta vulgaris	Capsicum annuum	20.7	35.52	87.5	200	forward
CNT30187559	Beta vulgaris	Secale cereale	18.22	26.39	85.23	176	forward
CNT30510308	Beta vulgaris	Solanum lycopersicum	17.7	66.28	88.3	171	forward
CNT30441217	Beta vulgaris	Aegilops tauschii	16.36	21.27	85.44	158	forward
CNT304322	Beta vulgaris	Zea mays	13.56	22.94	86.26	131	forward
CNT30227528	Beta vulgaris	Ananas comosus	16.05	21.32	88.39	155	forward
CNT30352420	Beta vulgaris	Eragrostis tef	19.15	29.89	82.16	185	forward
CNT30577638	Beta vulgaris	Oryza barthii	21.64	32.25	85.65	209	forward

Expression of CNT30402836

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSTKQSRAREEPNPSQTCRFCQHQPSFSALP*

>peptide 2 (83 aa)
MSTSTSPAASSSMLRPSFNILWMRLPKVLGSSRLNPDVNKAVSCKRRTKSFTDLSFLSASALFLSSSMIGFSGLISMVFLEDM*

>peptide 3 (31 aa)
MLRGRSSESTIPLTKLRYSGINSSQLSMMKTR

>peptide 4 (52 aa)
MLESLKACAFMILSMLADHPYSPVTKQQGESTTRFRPSLVAETSFFPSNSLS*

Sequence

>CNT30402836
TAACCACTTGTCTTTAGGCAAAAACTAAATAAAATACCCCCAACTACCACTCAAAAAAATTCTCATAGTTCCAAAAGAGAACACACTCAACATCAAACGG
GGGGAGAAAAGGATAGAGAGTGTATTAAAAAGGACGAATAAAGAACTACTTACTACTACTAATCAGTAAAATCAGAAACAACCTAGAAACACCAAGCTTA
GTCGACTTCCTCCATCTTGGATTCCTCAGCATCAGCTTCCTCGAGGGCTGGCATGTCAACATCGACTTCTCCAGCAGCATCATCATCAATGCTCAGACCA
AGCTTCAACATTCTGTGGATGCGGTTGCCGAAGGTGTTAGGGTCATCAAGGCTGAACCCAGATGTCAACAAAGCAGTCTCGTGCAAGAGAAGAACCAAAT
CCTTCACAGACTTGTCGTTTTTGTCAGCATCAGCCCTCTTTCTCAGCTCTTCCATGATTGGGTTCTCTGGGTTGATCTCCATGGTCTTCTTAGAAGACAT
GTAACCAGCCATGCTTGAGTCCCTCAAAGCTTGTGCCTTCATGATCCTCTCCATGTTAGCAGACCATCCATACTCACCGGTGACCAAACAACAGGGAGAA
TCAACCACGCGCTTTAGACCCTCCTTGGTGGCAGAGACCAGTTTCTTCCCCTCAAACTCCTTGAGCTGACCGACAGCATACTCGTCGATAGCATCAACCA
TGTACAAAACTTCATAGCCCTTCTTCTTAAGTCTTTCAAGGAAGGGAGAGTTCTCAACTGCCTTCTTGGTCTCACCAGTGATGTAGAAGATGTCATTCTG
GCCCTCCTTCATTCTGGTCACGTAGTCCTTAAGGCTGGTCATCTCTTCACCGCTCTTGGTGGAGTGAAATGTTAAGGGGGAGATCCTCAGAATCCACAAT
ACCCTTGACAAAGCTGAGGTACTCAGGGATCAATTCCTCACAGTTGTCCATGATGAAAACACGGCG