Detailed information on CNT3040262


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01667|CAB6_ARATH, E-value = 2e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30400439Marchantia polymorphaTriticum turgidum12.6535.8583.1695forward
CNT30443761Marchantia polymorphaAegilops tauschii12.652083.1695forward
CNT30256504Marchantia polymorphaAvena sativa12.6522.0983.1695forward
CNT307903Marchantia polymorphaZea mays12.782585.4296forward
CNT30344605Marchantia polymorphaEragrostis tef11.4539.0988.3786forward
CNT30497096Marchantia polymorphaDigitaria exilis12.6524.6185.2695forward

Expression of CNT3040262

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPEDLHTSKFEVRRSSVKYDWAMANLKCRQT*

>peptide 2 (41 aa)
MGLLGTSSSRGRRGGAGRASTRRTWTLCCHCSRSRGTRRDR*

>peptide 3 (36 aa)
MVAAAIVAKTCSAAAAAAVGADLARRWRTTHELRVP*

>peptide 4 (55 aa)
WDDDVGNVVGPWVGQVAGQVLQGSGSGVGDGLDRESQESKKSETTCISHRKHNQN*

>peptide 5 (54 aa)
MGWTGGWPSSPGVRFRGRRWPGQRIPRKQEERDDLHIAQKTQSELNNAGRFAYL*

>peptide 6 (66 aa)
MAWTENPKKARRARRPAYRTENTIRIKQCRKICIPLSLKCEDPASNMIGQWPISNVDRHSYKVSTR*

Sequence

>CNT3040262
GTGGGATGATGATGTTGGCAATGTTGTTGGCCCATGGGTTGGACAGGTGGCTGGCCAAGTTCTCCAGGGGTCCGGTTCCGGGGTAGGCGATGGCCTGGAC
AGAGAATCCCAAGAAAGCAAGAAGAGCGAGACGACCTGCATATCGCACAGAAAACACAATCAGAATTAAACAATGCCGGAAGATTTGCATACCTCTAAGT
TTGAAGTGCGAAGATCCAGCGTCAAATATGATTGGGCAATGGCCAATCTCAAATGTCGACAGACATAGCTACAAAGTATCGACGCGTTAGCTATTAGATT
AATACAGTGTCACCCGATGGGATAAGATCCCTTTAAAATATAGAAAGTCCACCAATGTAGGCTTCCTTACCATTCTTGAGCTCCTTGAGCTTGTACTCCT
CGAGCTTCTTGGGGTCCTTGGCGAAACCCAGAGGGTCGAATGGGCCTCCTGGGTACTTCCTCTTCTCGTGGTAGGCGGGGCGGGGCTGGCCGGGCATCCA
CTCGGAGGACATGGACACTCTGCTGCCATTGCTCACGGTCGAGAGGGACGAGACGTGACCGCTGAAGAACTTGGTCCTCTGCGCTCCGCTGAGCAGGGCG
GGGGCTGAGAGACCTACGCACGCCATGGTAGCAGCTGCCATTGTCGCGAAAACTTGCTCCGCTGCTGCTGCTGCTGCTGTTGGTGCTGACCTTGCAAGGC
GATGGAGAACAACACACGAACTGCGCGTGCCTTAGCGGAGAGAGGAGGATC