« Back to Zea mays search


Detailed information on CNT304026


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676683Zea maysSetaria viridis30.6243.2193.88474forward
CNT30523930Zea maysSetaria italica21.935.4292.33339forward
CNT30179862Zea maysSecale cereale7.6932.3487.39119forward
CNT30287060Zea maysTriticum aestivum9.4343.7189.73146forward
CNT30464934Zea maysSaccharum spontaneum61.3745.0791.16950forward
CNT30347471Zea maysEragrostis tef32.0441.394.56496forward
CNT30366054Zea maysSorghum bicolor27.3331.2995.51423forward
CNT30595688Zea maysOryza meridionalis12.9831.788.56201forward
CNT30576048Zea maysOryza barthii20.3552.1589.21315forward
CNT30116511Zea maysOryza nivara6.5950.2594.12102forward
CNT30558443Zea maysPanicum hallii25.1926.7993.59390forward

Expression of CNT304026

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MTKHNLFGKTKLNHRSDGNKSKNQPCMISFTFHMA*

>peptide 2 (33 aa)
MCETPDSRARTPDPEQISRISPLHHHQTQQTPG*

>peptide 3 (47 aa)
MLEMEGGVQGARLGNWSIIRKQQTGTSSRLRQVERPQCCSQGELHTS*

>peptide 4 (46 aa)
MSRNPCWRAQTQLCTVQDPEQSQSGPWRGHANHAHEGPQRQVPQRM*

Sequence

>CNT304026
CAAGAATCCTGTTGCAGGAGCTTGGTAGTGCCACAGGTCTTGATGACAATCTTCAGAGGATAGATAAACAAGCTTGACTCAGAAAGGACATATGAGTCGA
AATCCTTGTTGGAGAGCTCAGACACAATTGTGCACCGTGCAAGATCCAGAACAGAGTCAATCTGGGCCCTGGAGAGGGCACGCAAACCACGCCCATGAGG
GTCCACAAAGACAGGTGCCTCAGAGAATGTGATCTCAAGGCGCTTCTCATAGCCCTCAAACCCGATAGCTGAGACCGGGGAAGCATCAGCAGCAGAAAGA
ACAGCCATTGGAGCAGGTGAATCAGAACACAATGCTGGAGATGGAGGGAGGAGTGCAAGGAGCAAGACTGGGGAACTGGTCGATTATCAGGAAGCAGCAG
ACTGGAACTTCTTCACGCCTCCGGCAGGTCGAACGTCCTCAATGCTGTAGCCAAGGGGAGCTTCATACATCATAGAACGACTACTGCTAGACTTTTTGCC
ACCCTTAGACTCCATTAGTACATCAAATTCCTGCATGGAAGACCAAAATATTGAACACATCCATCAAATCGAACAAAAATTCTTCTCATAAAAGATAAAA
CAAGATGTTGATGATCCAGGCACGACAGCTAAAATAAACCATCACAACGTACCACAGTTATGCCATTAAAGATATATGCCCAAAATAAATGTTTCTAACT
AATTAGAGCAACAGATCTATATCATTCACATGAGTACATGACCAAACATAACCTGTTTGGGAAAACAAAACTAAATCACAGATCTGATGGGAACAAAAGC
AAAAATCAGCCTTGTATGATTTCATTTACTTTCCACATGGCATGATATCACCTGTACAAGAAATCGTATGCGTCTTTTCAGTGAATTTATAGATCTTGTC
CACGAATCAAAACCTAAACAAAAAGGTTAATAGTTTTTCCTTACTTTTCCGAGTACCAGGGTAATGAGCCATATTTCCTATCCACGTTTCCTAATATGAA
CACATATTTCCTAACCATGTTTCCAAATCTAAACAAAGGTGGAGCGTATCCACTGCCATCAATTTTCAATTAACAGGGTTAGCATCAATTTTGAAGTAAC
AAAATACGTACAACGAACAAATGACCGATCCACCTATCTAAATCTGAACAGCGATAGCACGGATAACGCATCAAGCAACAGGTATAACGCCGACCACCAC
GTGACTTAAGAAAACGAGCTAACTCCATGTAGCTATGTTTTCATGCCTAAGGATCCAACCCTCATACATTCACACCGAGAAATCTAGAAAGGCAGCAACA
TAAACCAACACATCCAACAAATCTCGAATCTAATAACAAAAAACGTACAAAAAGAGAGGAATCGGCTAGAAAAAACTTACAAATCGACGAAGCTATGTGT
GAAACCCCTGATTCCCGAGCTCGCACGCCTGATCCGGAACAGATCTCACGAATTTCTCCCCTTCACCACCACCAGACGCAGCAGACCCCGGGCTGAGACA
AGAAAAACCGATTCTCTACCTAGTACTCGGCCAGTTCCTCGGTCCCGG