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Detailed information on CNT30402445


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Beta vulgarisSetaria viridis35.8132.1991.19159forward
CNT30702258Beta vulgarisQuercus lobata24.7723.482.73110forward
CNT30376640Beta vulgarisArabidopsis thaliana38.5121.2489.47171forward
CNT30619260Beta vulgarisSesamum indicum60.8125.3584.07270forward
CNT3020603Beta vulgarisCitrullus lanatus65.3218.7384.83290forward
CNT3072357Beta vulgarisQuercus suber60.3626.187.69268forward
CNT30380227Beta vulgarisManihot esculenta28.1529.9891.2125forward
CNT30200315Beta vulgarisPisum sativum59.6851.3682.64265forward
CNT30709695Beta vulgarisGlycine max45.7260.7888.67203forward
CNT30543653Beta vulgarisBrassica napus29.9519.2893.23133forward
CNT3076654Beta vulgarisBrassica juncea54.7352.0384.36243forward
CNT30261371Beta vulgarisBrassica rapa31.7633.7392.2141forward
CNT30612558Beta vulgarisArabis alpina31.0836.687.68138forward
CNT30607325Beta vulgarisGossypium raimondii62.8421.6382.44279forward
CNT30231757Beta vulgarisAnanas comosus28.3847.9188.1126forward
CNT30720770Beta vulgarisTriticum spelta20.7215.3383.792forward
CNT30365203Beta vulgarisSorghum bicolor26.855.3581.51119forward
CNT30355186Beta vulgarisLactuca sativa53.8332.4782.85239forward
CNT30705212Beta vulgarisPrunus avium27.0332.6190.83120forward
CNT3021984Beta vulgarisPopulus trichocarpa27.935.889.52124forward
CNT30329805Beta vulgarisDioscorea rotundata35.3626.7590.45157forward
CNT30103876Beta vulgarisOryza rufipogon45.2744.3787.06201forward
CNT30117878Beta vulgarisOryza nivara45.2744.6787.56201forward
CNT30723196Beta vulgarisLupinus angustifolius72.7540.5382.66323forward

Expression of CNT30402445

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRRPSARMMTPDLVSGKTKRSVWGLMVILLIPG*

>peptide 2 (85 aa)
MLQTMALFFIFFMWSTMIMSLLPVVVTKMSPSARTSSKVKIWKPSIRAWRAQIGAQPFPTSPYPQTTPTLPAIMTSVALIKPSGRE

Sequence

>CNT30402445
CATGACAAAGCTAGGGTGACCAGTGGCACAACCCAAGTTCATGAGACGACCCTCAGCCAGGATGATGACACCTGATTTAGTTTCAGGGAAGACGAAACGG
TCAGTTTGGGGCTTGATGGTGATCCTCTTGATTCCTGGGTAGGTCTCGAGCCCGTGCATGTCAATCTCATTGTCAAAGTGACCAATGTTGCAAACAATGG
CGTTGTTCTTCATCTTCTTCATGTGGTCGACCATGATAATGTCCTTGTTACCGGTGGTGGTGACAAAGATGTCACCCTCAGCGAGGACATCTTCCAAGGT
CAAGATCTGGAAACCTTCCATAAGAGCTTGGAGAGCACAGATAGGAGCACAACCCTTTCCAACATCTCCGTATCCACAGACAACACCGACCTTGCCGGCA
ATCATGACATCAGTGGCTCTCATCAAACCATCAGGGAGGGAGTG