Detailed information on CNT30402011


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30177674Beta vulgarisSecale cereale22.836.685.82134forward
CNT30627901Beta vulgarisDaucus carota29.8114.9688175forward
CNT30595932Beta vulgarisOryza meridionalis22.8310.0886.57134forward
CNT30646085Beta vulgarisCannabis sativa25.8934.8690.13152reverse complement
CNT30319422Beta vulgarisAsparagus officinalis22.8316.3691.79134reverse complement
CNT30148380Beta vulgarisBrachypodium distachyon22.839.8885.82134forward

Expression of CNT30402011

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MFTGVTWPSFFSLQALCSILWFRSLVGLLTICDFVT*

>peptide 2 (39 aa)
MLILMLLDVYRCDVAIFLFTPGFVFYLMVQVTGWFTHHL*

>peptide 3 (31 aa)
SEWHTSNVVIAFGFSCMHDIFFPLVFFYWMI*

>peptide 4 (44 aa)
MSCKCCILFLEFFVMKLVISSYNADGLGKTGGHGGKKGDPIVPT*

>peptide 5 (52 aa)
FRMAHFECSYCFWLLMHARHFFSAGVFLLDDLVLACYHYECAISENSLSDEL*

Sequence

>CNT30402011
TTCAGAATGGCACACTTCGAATGTAGTTATTGCTTTTGGCTTCTCATGCATGCACGACATTTTTTTTCCGCTGGTGTTTTTTTATTGGATGATTTAGTCT
TAGCTTGTTATCACTACGAGTGTGCTATTTCAGAAAATTCTTTGTCGGATGAGTTGTAAGTGCTGTATATTATTCCTTGAATTCTTTGTCATGAAATTGG
TGATATCGAGCTACAATGCTGATGGATTAGGAAAAACGGGGGGACATGGAGGCAAAAAAGGGGATCCTATTGTTCCGACCTAGGATAATAAGCCCATGAG
CTTGGTCTTACTTCACCGCCGAGAAACAAAAGAAGACTTCTACCTCCAAGTTTAACTCAGATGTCGCTCGCTTATTTTTGGGTGTGAAGCAGTGTCAAAC
CAATTTTGCTCAACTTTTCAAGTGCATGTTGATTTTAATGTTACTGGATGTTTACCGGTGTGACGTGGCCATCTTTCTTTTCACTCCAGGCTTTGTGTTC
TATCTTATGGTTCAGGTCACTGGTTGGTTTACTCACCATCTGTGATTTTGTGACGTGATTATTTATTTTCTTCTCTATATATATATT