Detailed information on CNT30401845


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501325Beta vulgarisCoffea canephora41.6312.3683.57286forward
CNT30618776Beta vulgarisSesamum indicum40.4713.4685.61278forward
CNT3021612Beta vulgarisCitrullus lanatus12.0840.8990.3683reverse complement
CNT30231730Beta vulgarisAnanas comosus8.1520.1491.0756forward
CNT30679583Beta vulgarisTriticum urartu37.125.4783.14255forward
CNT3035046Beta vulgarisCucumis melo24.896.683.63171reverse complement
CNT30104494Beta vulgarisOryza rufipogon8.4425.2291.3858reverse complement

Expression of CNT30401845

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MGPDFSDLPLSGIELLYTSGRNQVTPHHTFLRSHML

>peptide 2 (32 aa)
PMLRSQLDQSLCPGRRSGETFRFEVHLTRARE*

>peptide 3 (37 aa)
MLSFEYAGTKNPLTTNQQKSSGWVLPVSITEKNRNNN*

Sequence

>CNT30401845
CCCTATGCTACGCTCTCAACTAGATCAATCGCTTTGTCCTGGTCGTAGATCGGGTGAAACTTTTCGATTCGAGGTTCACCTTACCCGTGCTCGAGAGTAG
GTTCTTTTCAGATACAATAAGAAAAGAAACATTTTTGTACTTCTTCTGACTTTCTGTTTTCCAACAGCACCAAATCTACGCAAATAGATAGACTCCTTTC
CCGCTGCTAAGAAAGAGCAAGAAACAAAATCAAATAATAATTGTTTTTCAACCAATGCTCTCTTTTGAGTATGCAGGTACTAAGAATCCTCTCACTACCA
ACCAACAGAAATCATCTGGCTGGGTCTTGCCGGTATCAATAACGGAAAAAAATAGAAACAACAATTAACTATGGCTCTTGGCCCAAACAACGTCCTAGGC
GTAGAGGAGATCGGAGCGACAGAGAACGCCTAGACGATGTTTTTCTTCCTGGCTGCAGTAAGTGTTTAAGTCGAATCATCTCAAGTTAAACTCCTGCCTT
GCCTCGATATCTTGAAGCCTCAAGGTCACAGCTCGCTTGTGAGCCTCTAGTCCCTCAACTTCAGCCATGGCTGCCACATATGGGCCCAGATTTCTCAGAC
CTTCCTCTGTCAGGGATTGAACTGTTATATACTTCTGGAAGGAATCAAGTGACACCCCACCATACATTCTTGCGTAGCCATATGTTG