Detailed information on CNT30401838


BLAST search results

BLAST vs Swiss-Prot:
sp|P05146|PSBH_SPIOL, E-value = 3e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730483Beta vulgarisCorchorus capsularis55.9948.7587.44215forward
CNT30629037Beta vulgarisVigna unguiculata32.0322.8287.8123forward
CNT30194600Beta vulgarisPisum sativum80.9939.8285.21311forward
CNT3090241Beta vulgarisSolanum tuberosum39.3211.4690.07151forward
CNT30283943Beta vulgarisTriticum aestivum53.1242.6880.88204forward
CNT30667320Beta vulgarisTriticum dicoccoides24.7415.8986.3295forward
CNT30231593Beta vulgarisAnanas comosus58.0728.387223forward
CNT30210627Beta vulgarisHelianthus annuus41.4113.585.53159forward
CNT30679835Beta vulgarisTriticum urartu38.811.6183.89149forward
CNT30357898Beta vulgarisLactuca sativa86.4616.6384.64332forward
CNT30422352Beta vulgarisPapaver somniferum77.3435.4886.2297forward
CNT30574487Beta vulgarisVitis vinifera86.253.6587.01331forward
CNT3035458Beta vulgarisCucumis melo56.7711.8285.32218forward

Expression of CNT30401838

Peptides detected in this lncRNA

>peptide 1 (34 aa)
KVRTSWFFWIISFSCGFNSLKFHPVKRTNHIFPQ*

Sequence

>CNT30401838
GAAAGGTTAGAACTTCCTGGTTCTTTTGGATTATTTCATTTTCTTGTGGATTTAATTCATTGAAATTTCATCCAGTAAAACGGACGAATCATATATTTCC
ACAATAATAGATAGAAATATTGCAAATAAAGCCATTGCAACTCCCATCAAAGGAGTAGTTCCCCACCCAGGAGCTACTTTACCATATTCCGAATTCAACG
GTTTCAATAAAGCTCCTACACTAGTAGGTTTTGGATGAGATCTAGAACTACCCTCAACGGTTTATGTAGCCATAAATCCGATTATATTCATTGAGTTAAG
TTGACTTGGTATACCATTCCGTTGTAAATAAATGATTTTATCATAGATCCATTGTGGTCTTAAAATTATATAATAATGGAAACA