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Detailed information on CNT30401729


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516063Beta vulgarisJuglans regia66.4292.1180.55910forward
CNT30279009Beta vulgarisChenopodium quinoa80.5172.1982.141103forward
CNT30637282Beta vulgarisCapsicum annuum82.5557.4480.371131forward
CNT3097291Beta vulgarisSolanum tuberosum82.5573.4480.461131forward
CNT30145547Beta vulgarisMedicago truncatula81.2455.9380.771113forward
CNT30626099Beta vulgarisDaucus carota82.6336.2781.181132forward
CNT30572920Beta vulgarisVitis vinifera55.6978.6682.04763forward
CNT30595410Beta vulgarisEragrostis curvula81.5381.8981.651117forward
CNT30111644Beta vulgarisFicus carica81.1778.0482.371112forward

Expression of CNT30401729

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLRLKHHHREDEGQGEGSTPSEYCNLPEFAHPPTASQQR*

>peptide 2 (61 aa)
MSLCWSAGIPSLSVIFAFTLSIVSELSTSSVMVLPVRVFTKICIPPLKRRTRCKVDSFWIL*

>peptide 3 (43 aa)
RQLSLYLFIIGHTNSIYPHKFSKPHYLTANNFTVHTPVLTTRI*

Sequence

>CNT30401729
CGCCAACTTTCACTTTATTTATTTATAATAGGGCATACTAATAGTATATACCCCCACAAGTTTTCCAAGCCACATTACTTAACAGCAAATAATTTCACAG
TTCACACACCAGTACTTACTACTCGCATCTAGAAACCATAACCAATAGTACTTAACCACATAACAAACAGGAAAGAAAACCCACACATAACACCCAGAGA
CTAGAACTTCAAAACACAAATGCTAAGACTCAAGCATCACCACCGCGAAGACGAAGGACAAGGTGAAGGGTCGACTCCTTCTGAATATTGTAATCTGCCA
GAGTTCGCCCATCCTCCAACTGCTTCCCAGCAAAGATGAGTCTCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGAATCTTGGTCTTCACATTATCAAT
TGTATCAGAACTCTCCACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCATCCCACCTCTGAGACGGAGGACCAAGTGCAAGGTT
GATTCCTTTTGAATGTTATAGTCAGCTAGAGTCCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGTCTCTGCTGGTCAGCTGGAATTCCCTCCTTGT
CTGTGATCTTTGCCTTCACATTGTCAATAGTATCCGAGCTTTCAACTTCAAGTGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCATCCCTCC
CCTCAAACGAAGAACCAGGTGCAAAGTGGACTCCTTCTGGATATTATAATCGGCCAATGTCCTGCCATCCTCAAGCTGTTTACCGGCAAAGATGAGCCTC
TGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGAATCTTAGTCTTGACGTTCTCAATAGTGTCAGAACTCTCAACTTCCAAGGTTACTGTCTTGCCTGTGA
GGGTTTTAACAAAGATCTGCATACCACCCCTTAAGCGGAGAACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCTAGAGTCCGACCATCTTC
CAATTGCTTTCCGGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTATCAGTAATTTTTGTCTTAACATTGTCAATAGTGTCTGAGCTTTCG
ACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCATGCCACCCCTGAGACGAAGAACCAAATGAAGAGTTGATTCCTTTTGGATGT
TGTAGTCTGCTAACGTCCTTCCATCCTCCAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGTGGAATCCCCTCCTTGTCCTGGATCTTGGTCTT
GACATTATCGATTGTGTCTGAGCTCTCGACTTCGAGAGTAATAGTCTTTCCGGTGAGAGTTTTCACAAAG