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Detailed information on CNT30401699


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H1E4|RAP24_ARATH, E-value = 2e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730067Beta vulgarisCorchorus capsularis32.5812.8179.92259forward
CNT30634641Beta vulgarisCapsicum annuum22.268.2784.18177forward

Expression of CNT30401699

Peptides detected in this lncRNA

>peptide 1 (62 aa)
GDSNNTLGFLRLSRFPLVFFIPLFSQTLTNSLKFSINRRMKGFVLAEFTTNVGTFMTKIWEI*

>peptide 2 (39 aa)
VTVTTPLVFFDFPDFPWCFSFPCLAKLSQIASSLALTEE*

Sequence

>CNT30401699
AGGTGACAGTAACAACACCCTTGGTTTTCTTCGACTTTCCAGATTTCCCCTGGTGTTTTTCATTCCCTTGTTTAGCCAAACTCTCACAAATAGCCTCAAG
TTTAGCATTAACAGAAGAATGAAGGGGTTTGTACTCGCCGAATTCACCACCAATGTGGGCACCTTCATGACGAAGATTTGGGAAATTTAGTCGAGCAAAG
TCACCCCTAAGCTTATAAGCTGCTTTGTCGTAAGCCAAAGCAGCTTCTTCAGCTGTATCAAAAGTACCCAACCAAAGTCGGGTTCTATTTTTAGGGAGTC
TAATCTCAGCCACCCATTTTCCCCAGTGACGTTGTCGGACACCCCGATAAAGCTTTGTGGGCTTTGGTGGGGTACCCGATTGTTTCATGGGTATGGGCTT
AGGAGAGAGAAAACTGTTCATGTTTGTAGACTGGTATGAAGGAAGTGGAGGTTGTTAAGCCCAAGAGAAGTAGATGGGTCAGGATGGTTGAGCCCAAAAA
AGGGGGCTTGCTGTGAATAGCAATAACCATCTTGGAAGAAAGAAGTTGGATCTTGAGGAAAAGAGGAGAGAGAAAATGAGAAATCTTATAAAAAAAAAAG
TGGATCTCACTTCTGAAAACACCTATCTTCAATTAAAAGTTTGATTTTTGGTTCATACAAATTTCCATAAATAGAAAGTTTATAATAATAAAGCATTCAA
ATTCAATAAATCCCAAAGATCAAAACTTTCAAACCAAAAAGACAGATAATTAACAGAAAGGGGATACCAGAAAACGGGGTGTTGCAGAGAAAATT