Detailed information on CNT3040151


BLAST search results

BLAST vs Swiss-Prot:
sp|P12062|CB26_PETSP, E-value = 1e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641265Marchantia polymorphaNymphaea colorata22.0126.5185.6250forward
CNT30313266Marchantia polymorphaCamelina sativa35.2166.4581.5400forward

Expression of CNT3040151

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRLIMRSLPDGGGGHCRTGPKPVQRRWMRRRRWRPC*

>peptide 2 (35 aa)
LPAFFFISSFCLMALDTQLSTSQWSEKFGCFIGGS*

>peptide 3 (31 aa)
MQAALIVSSEPNRFNRTQKQRNVTAEMHSLS*

>peptide 4 (93 aa)
PSCIFLYFQFLFDGARHTTEYFSMVRKIWLLYRRVVDFSLPHPGYIRLRSECKTQELNLSNRVVSDTSIQVGHFFVQNEIDLLEKANHRSYSR*

>peptide 5 (94 aa)
MGPFPVTIAWTKNPNMENMASLPFFSSLTFSSAKICDPALNHTASPNFTPFLANNSGKTHPRAPNMAHRAWITSNSRFLAKVSGSAESPAVSHP*

>peptide 6 (38 aa)
MGPSTWVGPHRTFRTQCKQLSSSAQNPIDSTEPKNREM*

>peptide 7 (83 aa)
MASHLLASSKCLISQLKDFRLVSGGEGGGVGPGVVGNGVSQVVGQVLDGTLSGNDSLDEESEHGEHGEPSVLQLLDLQLSEDL*

Sequence

>CNT3040151
TCCTTCCTGCATTTTTCTTTATTTCCAGTTTTTGTTTGATGGCGCTCGACACACAACTGAGTACTTCTCAATGGTCCGAAAAATTTGGCTGCTTTATAGG
CGGGTCGTAGATTTTTCACTCCCGCATCCCGGTTATATTCGACTCAGATCCGAATGCAAAACCCAGGAACTCAATCTCAGCAATCGCGTTGTCTCTGATA
CCAGCATACAAGTAGGCCACTTTTTTGTACAAAATGAGATAGATTTATTAGAGAAGGCGAATCACAGGAGCTACTCCAGGTAGCGATTGGCAGCTTTGAA
GTAACCTACGAAGCAACTATATACACCTGGTGCCGACGGACTTTTGAGTTCCATGGCAAGCCATCTCCTCGCCAGCTCCAAATGCCTAATCTCACAGCTG
AAGGATTTTCGTCTAGTTTCCGGGGGTGAAGGTGGTGGCGTAGGCCCAGGCGTTGTTGGCAACGGGGTCAGCCAAGTGGTCGGACAGGTTCTCGATGGGA
CCCTTTCCGGTAACGATAGCCTGGACGAAGAATCCGAACATGGAGAACATGGCGAGCCTTCCGTTCTTCAGCTCCTTGACCTTCAGCTCAGCGAAGATCT
GTGATCCAGCCTTGAACCACACTGCCTCTCCGAACTTCACACCGTTCTTGGCCAACAACTCGGGGAAGACGCATCCCAGAGCTCCCAACATGGCCCATCG
AGCGTGGATCACCTCCAATTCACGGTTCTTGGCGAAGGTCTCGGGGTCAGCAGAGAGTCCTGCAGTGTCCCATCCGTAGTCACCGGGGAACTCACCAGTC
AGGTACGAGGGGGTAGCTCCGGAGAATGGGCCCAAGTACTTGGGTCGGTCCTCACCGTACCTTCAGAACACAATGCAAGCAGCTCTCATCGTCAGCTCAG
AACCCAATCGATTCAACAGAACCCAAAAACAGAGAAATGTAACAGCAGAAATGCATTCACTTAGCTAGACTTGAAGAGAAGCACAATGAGGCTGATCATG
AGATCGTTACCAGATGGAGGCGGGGGGCATTGCCGGACAGGCCCAAAGCCTGTCCAACGAAGGTGGATGCGGAGACGGCGGTGGCGGCCATGCTGACTAG
AAGGCGGTGAGAGGAGGTGAAGTGTTCGAGTATGAG