Detailed information on CNT3040147


BLAST search results

BLAST vs Swiss-Prot:
sp|P27492|CB21_TOBAC, E-value = 4e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30124683Marchantia polymorphaPhyscomitrium patens23.3646.5284.64267forward

Expression of CNT3040147

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MASHLLASSKCLISQLKDFRLVSGGEGVWVLSQVQGVE*

>peptide 2 (38 aa)
MSLATRSFLACRPKLFSRASLACPYRMPLLPHPRISDLF

>peptide 3 (43 aa)
MGSTTSPKGPPATLYPSMAPMSTTWQAQMARMLWAWTRLELPR*

>peptide 4 (53 aa)
MRFPVAPSDIVVLSFHVSGHSFVPRMSPEAVLPRFIGLPLSHAAPATSTNLRPL

>peptide 5 (65 aa)
MLRAITWLFNPHAIPRSPFGYCGFVLSCLWPLVRSSHVARSCSPALHWPAPIACRSCHIHESPTSF

>peptide 6 (93 aa)
PSCIFLYFQFLFDGARHTTEYFSMVRKIWLLYRRVVDFSLPHPGYIRLRSECKTQELNLSNRVVSDTSIQVGHFFVQNEIDLLEKANHRSYSR*

>peptide 7 (35 aa)
LPAFFFISSFCLMALDTQLSTSQWSEKFGCFIGGS*

>peptide 8 (37 aa)
MDVAGVKGIGYLIISSEPMRPDATSYHVAVQSSCDSP*

>peptide 9 (32 aa)
MRGMVELQKSWRIFICSTKRSAGRERRWTWRG*

Sequence

>CNT3040147
TCCTTCCTGCATTTTTCTTTATTTCCAGTTTTTGTTTGATGGCGCTCGACACACAACTGAGTACTTCTCAATGGTCCGAAAAATTTGGCTGCTTTATAGG
CGGGTCGTAGATTTTTCACTCCCGCATCCCGGTTATATTCGACTCAGATCCGAATGCAAAACCCAGGAACTCAATCTCAGCAATCGCGTTGTCTCTGATA
CCAGCATACAAGTAGGCCACTTTTTTGTACAAAATGAGATAGATTTATTAGAGAAGGCGAATCACAGGAGCTACTCCAGGTAGCGATTGGCAGCTTTGAA
GTAACCTACGAAGCAACTATATACACCTGGTGCCGACGGACTTTTGAGTTCCATGGCAAGCCATCTCCTCGCCAGCTCCAAATGCCTAATCTCACAGCTG
AAGGATTTTCGTCTAGTTTCCGGGGGTGAAGGTGTCTGGGTCCTCAGCCAAGTTCAGGGGGTCGAATGAGCCTCCGGGGTAGATGGGGTCGACGACATCA
CCCAAAGGACCTCCTGCTACTCTGTATCCCTCGATGGCTCCCATGAGCACAACCTGGCAAGCCCAGATGGCCAGAATGCTCTGGGCGTGGACGAGGCTCG
AGTTACCGAGGTAGTCCAAACCTCCCTCAGCGAAGATCTGTGATCCAGCCTTGAACCACACTGCCTCTCCGAACTTCACACCGTTCTTGGCCAACAACTC
GGGGAAGACGCATCCCAGAGCTCCCAACGAAGGTGGATGCGGAGACGGCGGTGGCGGCCATGCTGACTAGAAGGCGGTGAGAGGAGGTGAAGTGTTCGAG
TATGAGAGGAATGGTTGAGTTGCAGAAAAGCTGGAGAATCTTTATATGTTCGACTAAACGGAGTGCAGGTAGAGAGCGTAGATGGACGTGGCGGGGGTAA
AAGGGATAGGATATCTGATAATATCGAGTGAGCCAATGAGGCCAGATGCTACGAGCTATCACGTGGCTGTTCAATCCTCATGCGATTCCCCGTAGCCCCT
TCGGATATTGTGGTTTTGTCCTTTCATGTCTCTGGCCACTCGTTCGTTCCTCGCATGTCGCCCGAAGCTGTTCTCCCGCGCTTCATTGGCCTGCCCCTAT
CGCATGCCGCTCCTGCCACATCCACGAATCTCCGACCTCTTTC