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Detailed information on CNT30401101


BLAST search results

BLAST vs Swiss-Prot:
sp|P08834|NU1M_CITLA, E-value = 9e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690827Triticum turgidumOryza sativa94.8241.8496.791154forward
CNT30501657Triticum turgidumCoffea canephora45.2811.2191.83551forward
CNT30187493Triticum turgidumSecale cereale37.310099.78454forward
CNT30220178Triticum turgidumHordeum vulgare44.4521.8999.63541forward
CNT30592620Triticum turgidumMusa acuminata35.9119.2291.76437forward
CNT30664530Triticum turgidumTriticum dicoccoides29.42100100358forward
CNT30598800Triticum turgidumFraxinus excelsior30.5710093.82372forward
CNT30228621Triticum turgidumAnanas comosus23.8369.7196.55290reverse complement
CNT30207841Triticum turgidumHelianthus annuus47.9921.889.73584forward
CNT30687453Triticum turgidumTriticum urartu94.9921.6297.581156forward
CNT30354619Triticum turgidumLactuca sativa35.1725.6991.82428forward
CNT30574571Triticum turgidumVitis vinifera24.984.9493.75304forward
CNT3052251Triticum turgidumAmborella trichopoda45.039.3487.77548forward
CNT3099667Triticum turgidumOryza rufipogon27.6914.796.74337forward
CNT30115707Triticum turgidumOryza nivara94.8226.4996.791154forward
CNT30557320Triticum turgidumPanicum hallii36.4810098.2444forward
CNT30335348Triticum turgidumCynara cardunculus29.3398.6291.32357forward

Expression of CNT30401101

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTYLIRLKLMSKTRSFTSIEAGRKGAEATV*

>peptide 2 (36 aa)
VGCFLEVRPGFSLKKSKRGGGIDLSNAYSVVPAWPH*

>peptide 3 (57 aa)
MNRTSTSSVTPTALTALYPNPTCSGPGSSRISSSVSGPWKLGSIRLGLIENSISFPS*

>peptide 4 (41 aa)
MLGSAGSSSSSEKKTETKHICFNDISNQTEIDVEDTIIHIN*

Sequence

>CNT30401101
GGGTGGGCTGCTTTTTAGAAGTTCGGCCCGGTTTTTCATTAAAAAAATCAAAAAGGGGGGGAGGGATTGACCTTTCTAACGCATATTCTGTCGTACCGGC
ATGGCCCCACTGATTTGTTTTCGATCGGAGCATCAAGCAGCGCAACCCGGTTCTACTTGACTAAGCCCCGTGCTCGTCCAAGGAGGGAGTTTGCTTTACC
CAACTCCCCTTTTTGATAACAAGGCAAAAACCTCCGACCCGACATTCATGAGTTTCGAATGAAGAATGAAGAGTGCCCTGCCCCTCTTTTTTTTCCCTAA
ATCTTGGATTTGGAAGTTGGTAAAGACCCACCCCTTGTTTAAGTCAGAATGAGTCCCCGAGACATTGGCTTCCGCCAACAGTGAACTATTAAGGATCGCA
TCCCGCGCATATTCTACATTATAGCCTGCAACTAATTCAGCTTCCGCTTCTGGGAGATCAGACGGAGCTCGATTAGTTTCTGCTAGACGAGGAATAAGGA
ACATAACCAATACGGGGAACAAGGGAATACCGGACCATATCTGCTTTTGCGCCATGACAATCTCACTCGAATTACAGGGACCTACACATATTAGTACAGT
AATAAGAATAAGACCAATAGAGACTTCATAAGGGACCATTTGAGCTGCAGATCGTAATGCTCCTAGAAAGGCATATTTCGAATATAGAGGACGTTCCCAA
CAATCCACGAGAATATCATACCCAACTATGAACCGTACGAGCACATCCTCTGTCACCCCCACCGCGCTTACGGCTCTATACCCCAACCCAACTTGCTCTG
GCCCTGGGTCCTCCCGCATCTCTTCCTCGGTAAGCGGACCGTGGAAGCTGGGGAGTATCCGCTTGGGACTGATAGAAAATAGCATATCTTTTCCCTCCTG
ACCCCTATAAAAATCTAGTGGAAGTCCGGTCGCGTCGGAGACATCTTTATCTGATTTTGAGGCTTCGTCGTCCGGCTCCTCCAAAATTATGTTAGGATCG
GCTGGCTCATCCTCATCATCCGAAAAGAAAACAGAGACAAAACATATTTGTTTCAATGACATATCTAATCAGACTGAAATTGATGTCGAAGACACGATCA
TTCACATCAATTGAAGCAGGCAGGAAGGGCGCGGAAGCTACCGTTTAACGAATGCAATGCAAGCAAGGTAGCTTGCTTACTCTCCATCTAGCGTGCGTTG
GCGGCAAGGAAGGAGGC