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Detailed information on CNT30400439


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDM1|CB121_HORVU, E-value = 5e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673891Triticum turgidumSetaria viridis76.2342.2689.11202forward
CNT30515355Triticum turgidumJuglans regia38.4916.5982.35102forward
CNT30567058Triticum turgidumActinidia chinensis43.431.9490.43115forward
CNT30588696Triticum turgidumMusa acuminata43.442.7590.43115forward
CNT30236705Triticum turgidumBrassica oleracea42.6423.9981.42113forward
CNT30443761Triticum turgidumAegilops tauschii65.2836.4298.84173forward
CNT30256504Triticum turgidumAvena sativa66.0440.798.29175forward
CNT307903Triticum turgidumZea mays65.2845.0594.22173forward
CNT30609040Triticum turgidumGossypium raimondii41.5123.9186.36110forward
CNT30346386Triticum turgidumEragrostis tef65.2824.7993.64173forward
CNT30364335Triticum turgidumSorghum bicolor31.79.6394.0584forward
CNT30370487Triticum turgidumOryza glumipatula27.177.5391.6772forward
CNT3058384Triticum turgidumAmborella trichopoda25.6614.2688.2468forward
CNT30148497Triticum turgidumBrachypodium distachyon24.5322.3493.8565forward
CNT30102128Triticum turgidumOryza rufipogon46.0421.0792.62122forward
CNT30576871Triticum turgidumOryza barthii46.0414.1992.62122forward
CNT30580093Triticum turgidumEchinochloa crusgalli65.2822.3294.22173forward
CNT30497042Triticum turgidumDigitaria exilis65.2821.7694.22173forward
CNT30551312Triticum turgidumOryza brachyantha65.2816.3895.38173forward
CNT3040262Triticum turgidumMarchantia polymorpha35.8512.6583.1695forward

Expression of CNT30400439

Peptides detected in this lncRNA

>peptide 1 (86 aa)
VLDLLELELLELCGVLGEAERVEGAAGVLLLLRVLLHGALLLREGDGQELDRQDGRQVRRLPVGERRPLLRLHPVAQPQRLRHQYPR

>peptide 2 (87 aa)
PFLISLSLSSSNFAGSLEKPSGSKAPPGYFFFSGSFSMVRCCSAKAMARNSIARMVGRYVACPSGSAAHSCAFTQLPSPSASGTSTPG

Sequence

>CNT30400439
CCGTTCTTGATCTCCTTGAGCTTGAGCTCCTCGAACTTTGCGGGGTCCTTGGAGAAGCCGAGCGGGTCGAAGGCGCCGCCGGGGTACTTCTTCTTCTCCG
GGTCCTTCTCCATGGTGCGCTGCTGCTCCGCGAAGGCGATGGCCAGGAACTCGATCGCCAGGATGGTCGGCAGGTACGTCGCCTGCCCGTCGGGGAGCGC
CGCCCACTCCTGCGCCTTCACCCAGTTGCCCAGCCCCAGCGCCTCCGGCACCAGTACCCCAGGCT