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Detailed information on CNT30400060


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673990Triticum turgidumSetaria viridis31.3142.9792.12165forward
CNT30183892Triticum turgidumSecale cereale80.4680.1595.28424forward
CNT30307914Triticum turgidumTriticum aestivum76.6699.5195.79404forward
CNT30226503Triticum turgidumHordeum vulgare81.0276.1195.78427forward
CNT30442646Triticum turgidumAegilops tauschii82.3536.8495.85434forward
CNT30670281Triticum turgidumTriticum dicoccoides84.8255.1999.33447forward
CNT309612Triticum turgidumZea mays31.3117.5387.88165forward
CNT30344604Triticum turgidumEragrostis tef30.3617.6886.88160forward
CNT30102287Triticum turgidumOryza rufipogon20.1131.1890.57106forward
CNT30576846Triticum turgidumOryza barthii17.0824.6692.2290forward
CNT30580567Triticum turgidumEchinochloa crusgalli31.3122.0992.12165forward
CNT30497331Triticum turgidumDigitaria exilis30.9317.9787.73163forward

Expression of CNT30400060

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MTMSPMLLCHGSARCVARFSSGPVPGYVACPSGSAAHSCAFTQLPSPSASGT

>peptide 2 (78 aa)
MKTMCSGSSISPQPGRLRSRAVDISGDDDVADVVVPRVREVRGQVLQRAGAGVRRLPVGERRPLLRLHPVAQPQRLRHQ

>peptide 3 (88 aa)
MQEFIQIIRVHSQQRLLLKLYTLQRLPAGELTLLYSSCTHGRTRAEPAWQVDQPVDRRRNMNENHVLRLLDLPSARSAPLKGRRYFWG*

Sequence

>CNT30400060
GGGTCTCCCCTGACTTTGTTCTTTCTGTAATCACTGATGACATTTCCAGCTTCGCTGGTTAAATAAAAATGCAGCAGCGTTGATCCTCAAGAAAAAGACC
ATCATCATGCAAGAGTTTATACAGATCATACGGGTGCATTCACAACAGCGGCTACTACTTAAGCTTTACACATTACAAAGGTTGCCGGCCGGAGAGCTGA
CGTTGTTGTACAGTTCCTGCACGCACGGACGTACGCGCGCAGAGCCAGCGTGGCAAGTTGATCAACCAGTCGATCGACGCAGAAACATGAATGAAAACCA
TGTGCTCCGGCTCCTCGATCTCCCCTCAGCCCGGTCGGCTCCGCTCAAGGGCCGTAGATATTTCTGGGGATGACGATGTCGCCGATGTTGTTGTGCCACG
GGTCCGCGAGGTGCGTGGCCAGGTTCTCCAGCGGGCCGGTGCCGGGGTACGTCGCCTGCCCGTCGGGGAGCGCCGCCCACTCCTGCGCCTTCACCCAGTT
GCCCAGCCCCAGCGCCTCCGGCACCAG