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Detailed information on CNT30399846


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30306320Triticum turgidumTriticum aestivum82.59100100408forward
CNT30589124Triticum turgidumMusa acuminata27.1344.0888.81134forward
CNT30443217Triticum turgidumAegilops tauschii77.9449.8195.06385forward
CNT30254921Triticum turgidumAvena sativa31.9866.1191.77158forward
CNT30669683Triticum turgidumTriticum dicoccoides82.3959.1699.26407forward
CNT30142107Triticum turgidumLolium perenne20.4511.7692.08101forward

Expression of CNT30399846

Peptides detected in this lncRNA

>peptide 1 (96 aa)
ILKKKTIIMQEFIQIIRVHSQQRLLLKLYTLQRLPAGELTLLYSSCTHGRTRAEPAWQVDQPVDRRRNMNENHVLRLLDLPSARSAPLKGRRYFWG*

>peptide 2 (67 aa)
MTMSPMLLCHGSARCVARNSIARMVGRLPQGTGLPRYVACPSGSAAHSCAFTQLPSPSASGTSTPGCT

>peptide 3 (94 aa)
MKTMCSGSSISPQPGRLRSRAVDISGDDDVADVVVPRVREVRGQELDRQDGRQVAPGHRVAQVRRLPVGERRPLLRLHPVAQPQRLRHQYPRLHV

>peptide 4 (38 aa)
SSRKRPSSCKSLYRSYGCIHNSGYYLSFTHYKGCRPES*

Sequence

>CNT30399846
GATCCTCAAGAAAAAGACCATCATCATGCAAGAGTTTATACAGATCATACGGGTGCATTCACAACAGCGGCTACTACTTAAGCTTTACACATTACAAAGG
TTGCCGGCCGGAGAGCTGACGTTGTTGTACAGTTCCTGCACGCACGGACGTACGCGCGCAGAGCCAGCGTGGCAAGTTGATCAACCAGTCGATCGACGCA
GAAACATGAATGAAAACCATGTGCTCCGGCTCCTCGATCTCCCCTCAGCCCGGTCGGCTCCGCTCAAGGGCCGTAGATATTTCTGGGGATGACGATGTCG
CCGATGTTGTTGTGCCACGGGTCCGCGAGGTGCGTGGCCAGGAACTCGATCGCCAGGATGGTCGGCAGGTTGCCCCAGGGCACCGGGTTGCCCAGGTACG
TCGCCTGCCCGTCGGGGAGCGCCGCCCACTCCTGCGCCTTCACCCAGTTGCCCAGCCCCAGCGCCTCCGGCACCAGTACCCCAGGCTGCACGTC